Detail information of GWHGAAZE000398


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03811.11.90355E-58unnamed protein product [Coffea canephora]
COGYP_113172.13E-26hypothetical protein MCA0659
trEMBLtr|A0A068U5Q3|A0A068U5Q3_COFCA7E-59Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03811.1}
TAIR10AT3G04300.16E-31RmlC-like cupins superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene76487047649393+
GWHAAZE00000001mRNA76487047649393+
GWHAAZE00000001exon76487047648810+
GWHAAZE00000001exon76490997649393+
GWHAAZE00000001CDS76487047648810+
GWHAAZE00000001CDS76490997649393+
Transcript Sequence

Network for GWHGAAZE000398

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0023


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05899.13Cupin_3271043.70E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.954
SRR3591706second leaf3.038
SRR3591707mature leaf4.239
SRR3591708Shoot apex11.867
SRR3591709Stem24.314
SRR3591710White floral bud13.173
SRR3591711White flower9.808
SRR3591712Green floral bud42.685
SRR3591713Yellow flower12.307
SRP173429 SRR8316895Juvenile bud stage 8.503
SRR8316896Juvenile bud stage 29.146
SRR8316897Juvenile bud stage 13.346
SRR8316894Third green stage 8.768
SRR8316900Third green stage 24.206
SRR8316901Third green stage 23.321
SRR8316898Complete white stage 0.220
SRR8316899Complete white stage 3.603
SRR8316903Complete white stage 1.509
SRR8316902Silver flowering stage0.589
SRR8316904Silver flowering stage0.557
SRR8316905Silver flowering stage0.683
SRR8316906Gold flowering stage 4.795
SRR8316907Gold flowering stage 4.740
SRR8316908Gold flowering stage 3.143
SRP132670SRR6706286Control42.975
SRR6706287Light intensity 50%37.997
SRR6706288Light intensity 20%44.194
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.019
CNS0095593Slightly white alabastrum(diploid) 212.409
CNS0095594Slightly white alabastrum(diploid) 331.240
CNS0095595Whole white alabastrum(diploid) 28.486
CNS0095596Whole white alabastrum(diploid) 37.808
CNS0095597Whole white alabastrum(diploid) 412.287
CNS0095598Silvery flower (diploied) 15.349
CNS0095599Silvery flower (diploied) 26.275
CNS0095600Silvery flower (diploied) 34.366
CNS0095601Golden flower (diploid) 18.254
CNS0095602Golden flower (diploid) 27.242
CNS0095603Golden flower (diploid) 37.892
CNS0095604Slightly white alabastrum(tetraploid) 19.824
CNS0095605Slightly white alabastrum(tetraploid) 211.248
CNS0095606Slightly white alabastrum(tetraploid) 33.828
CNS0095607Whole white alabastrum(tetraploid) 19.234
CNS0095608Whole white alabastrum(tetraploid) 25.521
CNS0095609Whole white alabastrum(tetraploid) 342.757
CNS0095610Silvery flower (tetraploid) 111.635
CNS0095611Silvery flower (tetraploid) 26.062
CNS0095612Silvery flower (tetraploid) 320.143
CNS0095613Golden flower (tetraploid) 19.271
CNS0095614Golden flower (tetraploid) 27.401
CNS0095615Golden flower (tetraploid) 310.890
CRA001975CRR073297Stem 110.356
CRR073298Stem 217.715
CRR073299Stem 324.620
CRR073300Leaf 19.129
CRR073301Leaf 29.608
CRR073302Leaf 311.398
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 21.280
CRR073305Juvenile bud 30.341
CRR073306Third green 13.030
CRR073307Third green 25.959
CRR073308Third green 32.137
CRR073309Second white 11.233
CRR073310Second white 21.696
CRR073311Second white 32.122
CRR073312Silver flowering 17.506
CRR073313Silver flowering 23.697
CRR073314Silver flowering 30.917
CRR073315Gold flowering 15.440
CRR073316Gold flowering 25.369
CRR073317Gold flowering 311.100
CRR073318Tawny withering 112.791
CRR073319Tawny withering 210.930
CRR073320Tawny withering 39.112