Detail information of GWHGAAZE000409


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007022105.13.95277E-49F-box and Leucine Rich Repeat domains containing protein [Theobroma cacao]
Swissprottr|Q9FYF4|FB77_ARATH2E-23Putative F-box protein At1g67390
trEMBLtr|A0A061F8F7|A0A061F8F7_THECC1E-49F-box and Leucine Rich Repeat domains containing protein {ECO:0000313|EMBL:EOY13630.1}
TAIR10AT1G67390.18E-16F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene78680167869005-
GWHAAZE00000001mRNA78680167869005-
GWHAAZE00000001exon78680167869005-
GWHAAZE00000001CDS78680167869005-
Transcript Sequence

Network for GWHGAAZE000409

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box21604.30E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.157
SRR3591706second leaf2.759
SRR3591707mature leaf3.995
SRR3591708Shoot apex3.236
SRR3591709Stem2.311
SRR3591710White floral bud1.954
SRR3591711White flower2.937
SRR3591712Green floral bud1.090
SRR3591713Yellow flower2.124
SRP173429 SRR8316895Juvenile bud stage 2.932
SRR8316896Juvenile bud stage 4.554
SRR8316897Juvenile bud stage 2.163
SRR8316894Third green stage 2.295
SRR8316900Third green stage 6.617
SRR8316901Third green stage 5.339
SRR8316898Complete white stage 3.001
SRR8316899Complete white stage 6.522
SRR8316903Complete white stage 5.749
SRR8316902Silver flowering stage2.174
SRR8316904Silver flowering stage5.580
SRR8316905Silver flowering stage1.970
SRR8316906Gold flowering stage 5.275
SRR8316907Gold flowering stage 4.686
SRR8316908Gold flowering stage 4.731
SRP132670SRR6706286Control7.534
SRR6706287Light intensity 50%5.905
SRR6706288Light intensity 20%6.719
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.617
CNS0095593Slightly white alabastrum(diploid) 22.953
CNS0095594Slightly white alabastrum(diploid) 32.021
CNS0095595Whole white alabastrum(diploid) 22.881
CNS0095596Whole white alabastrum(diploid) 31.336
CNS0095597Whole white alabastrum(diploid) 42.349
CNS0095598Silvery flower (diploied) 15.384
CNS0095599Silvery flower (diploied) 23.168
CNS0095600Silvery flower (diploied) 35.287
CNS0095601Golden flower (diploid) 12.868
CNS0095602Golden flower (diploid) 26.761
CNS0095603Golden flower (diploid) 35.662
CNS0095604Slightly white alabastrum(tetraploid) 12.935
CNS0095605Slightly white alabastrum(tetraploid) 22.381
CNS0095606Slightly white alabastrum(tetraploid) 35.594
CNS0095607Whole white alabastrum(tetraploid) 11.518
CNS0095608Whole white alabastrum(tetraploid) 21.751
CNS0095609Whole white alabastrum(tetraploid) 33.404
CNS0095610Silvery flower (tetraploid) 17.160
CNS0095611Silvery flower (tetraploid) 26.028
CNS0095612Silvery flower (tetraploid) 36.335
CNS0095613Golden flower (tetraploid) 12.955
CNS0095614Golden flower (tetraploid) 24.879
CNS0095615Golden flower (tetraploid) 37.217
CRA001975CRR073297Stem 13.645
CRR073298Stem 23.098
CRR073299Stem 31.578
CRR073300Leaf 13.995
CRR073301Leaf 22.094
CRR073302Leaf 32.223
CRR073303Juvenile bud 11.815
CRR073304Juvenile bud 22.021
CRR073305Juvenile bud 31.704
CRR073306Third green 11.870
CRR073307Third green 21.299
CRR073308Third green 31.753
CRR073309Second white 11.814
CRR073310Second white 21.955
CRR073311Second white 31.276
CRR073312Silver flowering 11.734
CRR073313Silver flowering 20.000
CRR073314Silver flowering 31.693
CRR073315Gold flowering 11.219
CRR073316Gold flowering 23.556
CRR073317Gold flowering 31.955
CRR073318Tawny withering 12.676
CRR073319Tawny withering 21.208
CRR073320Tawny withering 31.301