Gene detail

Detail information of GWHGAAZE000424

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011080157.1	PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Sesamum indicum]
Swissprot	tr\|Q9SZD4\|PRS4A_ARATH	26S proteasome regulatory subunit 4 homolog A
trEMBL	tr\|A0A068U5S4\|A0A068U5S4_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03836.1}
TAIR10	AT4G29040.1	regulatory particle AAA-ATPase 2A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	8114448	8119213	-
GWHAAZE00000001	mRNA	8114448	8119213	-
GWHAAZE00000001	exon	8114448	8114531	-
GWHAAZE00000001	exon	8114994	8115134	-
GWHAAZE00000001	exon	8115328	8115544	-
GWHAAZE00000001	exon	8115621	8115790	-
GWHAAZE00000001	exon	8117518	8117763	-
GWHAAZE00000001	exon	8118740	8119213	-
GWHAAZE00000001	CDS	8118740	8119213	-
GWHAAZE00000001	CDS	8117518	8117763	-
GWHAAZE00000001	CDS	8115621	8115790	-
GWHAAZE00000001	CDS	8115328	8115544	-
GWHAAZE00000001	CDS	8114994	8115134	-
GWHAAZE00000001	CDS	8114448	8114531	-

Transcript Sequence
>GWHTAAZE000426 ATGGGCCAGGGAACTCCGGGAGGTCTAAACCGGCAACCTGGAGACCGGAAAAATGACGGCGACAAAAAGGAGAAGAAATTCGAACCGGCGGCACCCCCGGCTCGCGTCGGCCGGAAACAACGAAAACAGAAAGGACCGGAGGCGGCGGCTCGACTACCGACGGTAACACCTTTAACGAAATGCAAACTGAGGCTACTAAAATTGGAGAGAATCAAGGACTATCTTCTTATGGAAGAGGAGTTTGTGGCCAATCAAGAGAGGTTGAAGCCTCAAGAGGAGAAGACTGAGGAGGATAGATCGAAGGTTGATGATCTTCGTGGATCGCCGATGAGTGTGGGGAATTTGGAAGAGTTGATCGATGAGAATCATGCGATTGTGTCTTCTTCGGTTGGACCGGAGTATTATGTAGGGATTTTGTCTTTTGTTGATAAGGATCAGCTTGAACCTGGATGTGCGATCTTGATGCATAATAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGAGGTCGACCCTATGGTGTCTGTAATGAAGGTTGAGAAGGCTCCTTTGGAATCATATGCTGATATAGGTGGGTTAGACGCCCAGATACAGGAAATCAAAGAAGCAGTTGAGCTCCCCTTGACACACCCTGAATTATATGAAGACATTGGTATCAAGCCTCCTAAAGGGGTCATACTTTATGGAGAGCCTGGAACTGGCAAGACCTTGCTTGCAAAGGCGGTGGCAAACTCCACATCAGCAACTTTCTTACGAGTTGTTGGAAGTGAATTGATCCAAAAGTACTTGGGTGATGGTCCCAAACTAGTGAGGGAACTCTTCAGAGTTGCTGACGATCTTTCACCATCTATCGTCTTCATTGATGAAATCGATGCAGTTGGGACGAAAAGGTATGATGCCCACTCAGGAGGGGAACGCGAAATTCAGAGGACTATGTTGGAACTGTTGAACCAGTTGGATGGATTTGATTCGAGAGGAGATGTCAAGGTGATCCTTGCAACAAACAAAATCGAAAGCCTTGACCCTGCCTTACTTCGGCCTGGTAGAATTGATAGGAAGATTGAATTCCCTCTTCCTGATATCAAAACAAGGAGGCGTATTTTCCAGATTCATACATCAAGGATGACTTTGGCTGACGATGTCAATTTAGAAGAATTTGTTATGACAAAGGATGAGTTTTCTGGTGCTGATATCAAGGCTATATGTACTGAAGCTGGGTTGCTTGCTTTAAGGGAGCGTCGTATGAAGGTGACGCATCCAGATTTCAAGAAGGCTAAAGACAAGGTTATGTTCAAGAAGAAAGAGGGAGTTCCCGAAGGACTTTATATGTGA

Network for GWHGAAZE000424

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0060

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16450.6	Prot_ATP_ID_OB	112	165	4.20E-10
PF00004.30	AAA	225	358	1.10E-39
PF17862.2	AAA_lid_3	380	423	1.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03062	PSMC1, RPT2	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0030163	biological_process	protein catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	358.954
	SRR3591706	second leaf	164.348
	SRR3591707	mature leaf	163.876
	SRR3591708	Shoot apex	254.417
	SRR3591709	Stem	340.760
	SRR3591710	White floral bud	327.909
	SRR3591711	White flower	444.420
	SRR3591712	Green floral bud	328.490
	SRR3591713	Yellow flower	367.619
SRP173429	SRR8316895	Juvenile bud stage	223.389
	SRR8316896	Juvenile bud stage	294.255
	SRR8316897	Juvenile bud stage	141.461
	SRR8316894	Third green stage	117.801
	SRR8316900	Third green stage	373.074
	SRR8316901	Third green stage	340.010
	SRR8316898	Complete white stage	181.031
	SRR8316899	Complete white stage	513.869
	SRR8316903	Complete white stage	258.588
	SRR8316902	Silver flowering stage	166.426
	SRR8316904	Silver flowering stage	207.373
	SRR8316905	Silver flowering stage	99.644
	SRR8316906	Gold flowering stage	352.040
	SRR8316907	Gold flowering stage	396.707
	SRR8316908	Gold flowering stage	428.557
SRP132670	SRR6706286	Control	368.459
	SRR6706287	Light intensity 50%	380.425
	SRR6706288	Light intensity 20%	400.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	224.675
	CNS0095593	Slightly white alabastrum(diploid) 2	225.642
	CNS0095594	Slightly white alabastrum(diploid) 3	220.466
	CNS0095595	Whole white alabastrum(diploid) 2	233.425
	CNS0095596	Whole white alabastrum(diploid) 3	226.564
	CNS0095597	Whole white alabastrum(diploid) 4	222.418
	CNS0095598	Silvery flower (diploied) 1	255.707
	CNS0095599	Silvery flower (diploied) 2	255.239
	CNS0095600	Silvery flower (diploied) 3	373.694
	CNS0095601	Golden flower (diploid) 1	224.862
	CNS0095602	Golden flower (diploid) 2	345.940
	CNS0095603	Golden flower (diploid) 3	323.781
	CNS0095604	Slightly white alabastrum(tetraploid) 1	250.834
	CNS0095605	Slightly white alabastrum(tetraploid) 2	210.301
	CNS0095606	Slightly white alabastrum(tetraploid) 3	334.325
	CNS0095607	Whole white alabastrum(tetraploid) 1	191.875
	CNS0095608	Whole white alabastrum(tetraploid) 2	186.493
	CNS0095609	Whole white alabastrum(tetraploid) 3	293.421
	CNS0095610	Silvery flower (tetraploid) 1	376.314
	CNS0095611	Silvery flower (tetraploid) 2	358.027
	CNS0095612	Silvery flower (tetraploid) 3	356.105
	CNS0095613	Golden flower (tetraploid) 1	260.111
	CNS0095614	Golden flower (tetraploid) 2	329.622
	CNS0095615	Golden flower (tetraploid) 3	308.483
CRA001975	CRR073297	Stem 1	381.168
	CRR073298	Stem 2	365.105
	CRR073299	Stem 3	466.779
	CRR073300	Leaf 1	401.835
	CRR073301	Leaf 2	374.952
	CRR073302	Leaf 3	491.552
	CRR073303	Juvenile bud 1	493.118
	CRR073304	Juvenile bud 2	476.659
	CRR073305	Juvenile bud 3	387.024
	CRR073306	Third green 1	357.772
	CRR073307	Third green 2	340.432
	CRR073308	Third green 3	333.843
	CRR073309	Second white 1	331.801
	CRR073310	Second white 2	330.614
	CRR073311	Second white 3	250.010
	CRR073312	Silver flowering 1	240.795
	CRR073313	Silver flowering 2	206.588
	CRR073314	Silver flowering 3	205.795
	CRR073315	Gold flowering 1	245.432
	CRR073316	Gold flowering 2	288.097
	CRR073317	Gold flowering 3	208.028
	CRR073318	Tawny withering 1	376.050
	CRR073319	Tawny withering 2	335.551
	CRR073320	Tawny withering 3	368.507