Detail information of GWHGAAZE000429


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004289729.10PREDICTED: probable pectate lyase 15-like [Fragaria vesca subsp. vesca]
Swissprottr|Q944R1|PLY15_ARATH0Probable pectate lyase 15 (Precursor)
trEMBLtr|A0A059A9W1|A0A059A9W1_EUCGR0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT4G13710.12E-175Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene82179498219360-
GWHAAZE00000001mRNA82179498219360-
GWHAAZE00000001exon82179498218170-
GWHAAZE00000001exon82182828218420-
GWHAAZE00000001exon82185128218615-
GWHAAZE00000001exon82186958219360-
GWHAAZE00000001CDS82186958219360-
GWHAAZE00000001CDS82185128218615-
GWHAAZE00000001CDS82182828218420-
GWHAAZE00000001CDS82179498218170-
Transcript Sequence

Network for GWHGAAZE000429

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0013


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41152911.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.555
SRR3591706second leaf1.270
SRR3591707mature leaf0.147
SRR3591708Shoot apex6.321
SRR3591709Stem18.628
SRR3591710White floral bud5.564
SRR3591711White flower0.344
SRR3591712Green floral bud27.888
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 7.539
SRR8316896Juvenile bud stage 15.529
SRR8316897Juvenile bud stage 3.895
SRR8316894Third green stage 8.013
SRR8316900Third green stage 26.937
SRR8316901Third green stage 16.874
SRR8316898Complete white stage 0.053
SRR8316899Complete white stage 1.375
SRR8316903Complete white stage 0.164
SRR8316902Silver flowering stage0.026
SRR8316904Silver flowering stage0.267
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.175
SRP132670SRR6706286Control37.393
SRR6706287Light intensity 50%41.040
SRR6706288Light intensity 20%43.197
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.979
CNS0095593Slightly white alabastrum(diploid) 23.166
CNS0095594Slightly white alabastrum(diploid) 38.620
CNS0095595Whole white alabastrum(diploid) 21.505
CNS0095596Whole white alabastrum(diploid) 32.440
CNS0095597Whole white alabastrum(diploid) 41.018
CNS0095598Silvery flower (diploied) 11.973
CNS0095599Silvery flower (diploied) 21.605
CNS0095600Silvery flower (diploied) 30.900
CNS0095601Golden flower (diploid) 10.605
CNS0095602Golden flower (diploid) 20.652
CNS0095603Golden flower (diploid) 30.240
CNS0095604Slightly white alabastrum(tetraploid) 12.748
CNS0095605Slightly white alabastrum(tetraploid) 21.286
CNS0095606Slightly white alabastrum(tetraploid) 31.888
CNS0095607Whole white alabastrum(tetraploid) 10.452
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 325.129
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.171
CNS0095612Silvery flower (tetraploid) 30.105
CNS0095613Golden flower (tetraploid) 10.240
CNS0095614Golden flower (tetraploid) 20.011
CNS0095615Golden flower (tetraploid) 30.005
CRA001975CRR073297Stem 155.212
CRR073298Stem 242.350
CRR073299Stem 381.508
CRR073300Leaf 111.463
CRR073301Leaf 213.704
CRR073302Leaf 324.295
CRR073303Juvenile bud 12.085
CRR073304Juvenile bud 21.240
CRR073305Juvenile bud 31.648
CRR073306Third green 10.060
CRR073307Third green 20.605
CRR073308Third green 30.618
CRR073309Second white 10.070
CRR073310Second white 20.272
CRR073311Second white 30.105
CRR073312Silver flowering 10.158
CRR073313Silver flowering 20.047
CRR073314Silver flowering 30.754
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 15.813
CRR073319Tawny withering 22.505
CRR073320Tawny withering 38.817