Detail information of GWHGAAZE000435


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010264062.10PREDICTED: F-box/kelch-repeat protein At3g24760 [Nelumbo nucifera]
Swissprottr|Q3EB08|FBK69_ARATH2E-121F-box/kelch-repeat protein At3g24760
trEMBLtr|F6HZY1|F6HZY1_VITVI9E-170Putative uncharacterized protein {ECO:0000313|EMBL:CCB60247.1}
TAIR10AT3G24760.14E-91Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene83654518367376+
GWHAAZE00000001mRNA83654518367376+
GWHAAZE00000001exon83654518365800+
GWHAAZE00000001exon83665668367376+
GWHAAZE00000001CDS83654518365800+
GWHAAZE00000001CDS83665668367376+
Transcript Sequence

Network for GWHGAAZE000435

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box16561.20E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.894
SRR3591706second leaf20.163
SRR3591707mature leaf28.252
SRR3591708Shoot apex17.424
SRR3591709Stem11.822
SRR3591710White floral bud15.746
SRR3591711White flower9.344
SRR3591712Green floral bud7.683
SRR3591713Yellow flower6.714
SRP173429 SRR8316895Juvenile bud stage 5.445
SRR8316896Juvenile bud stage 5.486
SRR8316897Juvenile bud stage 2.083
SRR8316894Third green stage 3.202
SRR8316900Third green stage 5.637
SRR8316901Third green stage 5.189
SRR8316898Complete white stage 3.952
SRR8316899Complete white stage 10.722
SRR8316903Complete white stage 6.910
SRR8316902Silver flowering stage3.415
SRR8316904Silver flowering stage5.205
SRR8316905Silver flowering stage2.041
SRR8316906Gold flowering stage 6.758
SRR8316907Gold flowering stage 6.959
SRR8316908Gold flowering stage 7.895
SRP132670SRR6706286Control11.149
SRR6706287Light intensity 50%9.788
SRR6706288Light intensity 20%9.332
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.998
CNS0095593Slightly white alabastrum(diploid) 25.288
CNS0095594Slightly white alabastrum(diploid) 33.818
CNS0095595Whole white alabastrum(diploid) 25.822
CNS0095596Whole white alabastrum(diploid) 35.504
CNS0095597Whole white alabastrum(diploid) 46.978
CNS0095598Silvery flower (diploied) 19.400
CNS0095599Silvery flower (diploied) 26.476
CNS0095600Silvery flower (diploied) 36.413
CNS0095601Golden flower (diploid) 14.382
CNS0095602Golden flower (diploid) 29.178
CNS0095603Golden flower (diploid) 38.690
CNS0095604Slightly white alabastrum(tetraploid) 17.164
CNS0095605Slightly white alabastrum(tetraploid) 25.688
CNS0095606Slightly white alabastrum(tetraploid) 312.154
CNS0095607Whole white alabastrum(tetraploid) 18.100
CNS0095608Whole white alabastrum(tetraploid) 26.787
CNS0095609Whole white alabastrum(tetraploid) 36.689
CNS0095610Silvery flower (tetraploid) 17.192
CNS0095611Silvery flower (tetraploid) 26.216
CNS0095612Silvery flower (tetraploid) 35.889
CNS0095613Golden flower (tetraploid) 15.476
CNS0095614Golden flower (tetraploid) 27.379
CNS0095615Golden flower (tetraploid) 312.731
CRA001975CRR073297Stem 112.591
CRR073298Stem 28.339
CRR073299Stem 311.592
CRR073300Leaf 19.557
CRR073301Leaf 25.805
CRR073302Leaf 37.279
CRR073303Juvenile bud 18.681
CRR073304Juvenile bud 27.280
CRR073305Juvenile bud 37.120
CRR073306Third green 116.504
CRR073307Third green 215.040
CRR073308Third green 314.834
CRR073309Second white 113.077
CRR073310Second white 214.002
CRR073311Second white 312.265
CRR073312Silver flowering 111.280
CRR073313Silver flowering 29.409
CRR073314Silver flowering 310.590
CRR073315Gold flowering 119.994
CRR073316Gold flowering 218.159
CRR073317Gold flowering 323.865
CRR073318Tawny withering 14.668
CRR073319Tawny withering 25.226
CRR073320Tawny withering 33.616