Detail information of GWHGAAZE000439


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007049800.10GTP-binding family protein [Theobroma cacao]
Swissprottr|Q9M8Z5|NSN1_ARATH0Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBLtr|A0A061DNE0|A0A061DNE0_THECC0GTP-binding family protein {ECO:0000313|EMBL:EOX93957.1}
TAIR10AT3G07050.10GTP-binding family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene83982548403133-
GWHAAZE00000001mRNA83982548403133-
GWHAAZE00000001exon84030428403133-
GWHAAZE00000001exon84025298402785-
GWHAAZE00000001exon84018448401955-
GWHAAZE00000001exon84015798401730-
GWHAAZE00000001exon84010448401310-
GWHAAZE00000001exon84006378400901-
GWHAAZE00000001exon84002728400451-
GWHAAZE00000001exon83997648399978-
GWHAAZE00000001exon83982548398703-
GWHAAZE00000001five_prime_UTR84030618403133-
GWHAAZE00000001CDS84030428403060-
GWHAAZE00000001CDS84025298402785-
GWHAAZE00000001CDS84018448401955-
GWHAAZE00000001CDS84015798401730-
GWHAAZE00000001CDS84010448401310-
GWHAAZE00000001CDS84006378400901-
GWHAAZE00000001CDS84002728400451-
GWHAAZE00000001CDS83997648399978-
GWHAAZE00000001CDS83983268398703-
GWHAAZE00000001three_prime_UTR83982548398325-
Transcript Sequence

Network for GWHGAAZE000439

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08701.12GN3L_Grn116912.50E-11
PF01926.24MMR_HSR12763376.10E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14538NUG1, GNL3 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.631
SRR3591706second leaf15.941
SRR3591707mature leaf12.389
SRR3591708Shoot apex39.112
SRR3591709Stem18.313
SRR3591710White floral bud19.792
SRR3591711White flower35.018
SRR3591712Green floral bud27.137
SRR3591713Yellow flower25.868
SRP173429 SRR8316895Juvenile bud stage 25.006
SRR8316896Juvenile bud stage 31.145
SRR8316897Juvenile bud stage 12.075
SRR8316894Third green stage 12.618
SRR8316900Third green stage 30.483
SRR8316901Third green stage 25.440
SRR8316898Complete white stage 6.715
SRR8316899Complete white stage 27.934
SRR8316903Complete white stage 12.629
SRR8316902Silver flowering stage9.291
SRR8316904Silver flowering stage14.844
SRR8316905Silver flowering stage6.068
SRR8316906Gold flowering stage 20.900
SRR8316907Gold flowering stage 20.185
SRR8316908Gold flowering stage 24.398
SRP132670SRR6706286Control23.743
SRR6706287Light intensity 50%24.316
SRR6706288Light intensity 20%27.890
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.916
CNS0095593Slightly white alabastrum(diploid) 225.389
CNS0095594Slightly white alabastrum(diploid) 324.278
CNS0095595Whole white alabastrum(diploid) 216.373
CNS0095596Whole white alabastrum(diploid) 318.749
CNS0095597Whole white alabastrum(diploid) 415.734
CNS0095598Silvery flower (diploied) 123.955
CNS0095599Silvery flower (diploied) 218.757
CNS0095600Silvery flower (diploied) 322.136
CNS0095601Golden flower (diploid) 114.402
CNS0095602Golden flower (diploid) 218.561
CNS0095603Golden flower (diploid) 317.859
CNS0095604Slightly white alabastrum(tetraploid) 119.645
CNS0095605Slightly white alabastrum(tetraploid) 218.741
CNS0095606Slightly white alabastrum(tetraploid) 335.904
CNS0095607Whole white alabastrum(tetraploid) 110.065
CNS0095608Whole white alabastrum(tetraploid) 26.987
CNS0095609Whole white alabastrum(tetraploid) 321.682
CNS0095610Silvery flower (tetraploid) 122.277
CNS0095611Silvery flower (tetraploid) 219.527
CNS0095612Silvery flower (tetraploid) 314.599
CNS0095613Golden flower (tetraploid) 110.697
CNS0095614Golden flower (tetraploid) 215.587
CNS0095615Golden flower (tetraploid) 311.024
CRA001975CRR073297Stem 124.006
CRR073298Stem 224.004
CRR073299Stem 322.956
CRR073300Leaf 122.731
CRR073301Leaf 220.498
CRR073302Leaf 320.861
CRR073303Juvenile bud 118.321
CRR073304Juvenile bud 210.398
CRR073305Juvenile bud 316.519
CRR073306Third green 13.980
CRR073307Third green 24.879
CRR073308Third green 35.500
CRR073309Second white 14.264
CRR073310Second white 26.188
CRR073311Second white 34.852
CRR073312Silver flowering 13.044
CRR073313Silver flowering 22.902
CRR073314Silver flowering 33.292
CRR073315Gold flowering 17.198
CRR073316Gold flowering 214.623
CRR073317Gold flowering 35.854
CRR073318Tawny withering 116.185
CRR073319Tawny withering 213.852
CRR073320Tawny withering 320.966