Gene detail

Detail information of GWHGAAZE000441

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007049794.1	0	Kinase superfamily protein [Theobroma cacao]
Swissprot	tr\|Q9SFT7\|Y3707_ARATH	0	Serine/threonine-protein kinase At3g07070
trEMBL	tr\|A0A061DPC8\|A0A061DPC8_THECC	0	Kinase superfamily protein {ECO:0000313\|EMBL:EOX93951.1}
TAIR10	AT3G07070.1	1E-145	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	8482507	8485799	+
GWHAAZE00000001	mRNA	8482507	8485799	+
GWHAAZE00000001	exon	8482507	8482633	+
GWHAAZE00000001	exon	8483283	8483506	+
GWHAAZE00000001	exon	8483585	8483774	+
GWHAAZE00000001	exon	8484296	8484687	+
GWHAAZE00000001	exon	8485479	8485799	+
GWHAAZE00000001	CDS	8482507	8482633	+
GWHAAZE00000001	CDS	8483283	8483506	+
GWHAAZE00000001	CDS	8483585	8483774	+
GWHAAZE00000001	CDS	8484296	8484687	+
GWHAAZE00000001	CDS	8485479	8485799	+

Transcript Sequence
>GWHTAAZE000443 ATGAGTTGTTTTTCGTGCTTTTCGGCCCAAGGAAAGAAATCATCTAAGAGGTTGAATAGCAGGGGAAAAGTGCAGGTGCCAGCTCCTTCTCCACTTCCTAAAGAACCCCCGCCACACTCACACCCCGAAAATCCGACAAAGATACAATCAAATGAAGCTGAAGACAACAAGAGTGCTACTAGCGAAAACAATATTGCAGCCCAAACTTTCACTTTCCGTGAGTTGGCAACAGCGACAAAGAATTTTCGGCAAGAATGTCTGATAGGGGAAGGTGGTTTTGGACGAGTTTACAAGGGAGTGCTTGAAAAACCGGCCAGGTTACTTACTGTGGCTAAGATAATGTTCAATATAGTTGTAGCCGTGAAGCAACTTGACCGGAATGGACTTCAGGGAAACAGAGAGTTTCTTGTGGAGGTTTTGATGCTAAGCCTCCTTCACGATCCGTATTTGGTAAGCCTTATCGGATATTGTGCCGATGGAGATCAGAGACTTCTCGTATATGAGCATATGCGATTGGGATGCCTTGAAGACCATCTCTTTGATCTTCGGCCCGGACAAAAGCCATTAAGTTGGTCCACAAGGATGAAAATAGCATTAAGTGCTGCCAAAGGTGTGGAATATTTGCACGATAAAGCCAATCCGCCTGTCATATATCGCGATTTAAAATCATCAAACATCTTGCTGGATGAGGAGTTCAACGCAAAACTCTCAGATTTTGGGCTAGCCAAGCTTGGACCGATTGGGGATAAGTCACATGTATCCTCGAGGGTGATGGGAACGTATGGATATTGTGCCCCGGAGTATCAAAGAACGGGTCAATTAACCGTAAAGTCGGATATATACAGTTTTGGTGTTGTTCTTTTGGAGTTGATTACCGGGCGGAGAGCCATTGATACCACAAGGAACAATGCAGAGCAAACTCTTGTTTCTTGGGCAGAACCAATGTTCAGGGATCCAAAGAGATTCGTAGAACTGATTGATCCACTTATCAAGGGAGAAGTTCCAAAGAAGAGTTTGAATCAAGCGGTAGCTGTTGCTGTCATGTGTTTACAAGATGATGGAACGGTCCGTCCATTGATTGGAGACGTAGTCACTGCTCTTAGTTTCCTTTGGATCGGACCCGAGTCAGATTTGCCTTCTCCTGCATCCGATACTTCTCCACCGTTTGATGATAAAGTCGGAGGGACTGAGGAAAATCAATTTGAAGAAGTTGGTACAGGGGAACGGGATAAAGATGTAAAAGAAGCTGTATAA

Network for GWHGAAZE000441

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	86	312	3.40E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.284
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	15.191
	SRR3591711	White flower	0.813
	SRR3591712	Green floral bud	7.905
	SRR3591713	Yellow flower	0.417
SRP173429	SRR8316895	Juvenile bud stage	0.340
	SRR8316896	Juvenile bud stage	0.324
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.099
	SRR8316900	Third green stage	2.651
	SRR8316901	Third green stage	1.406
	SRR8316898	Complete white stage	0.686
	SRR8316899	Complete white stage	0.237
	SRR8316903	Complete white stage	0.472
	SRR8316902	Silver flowering stage	0.638
	SRR8316904	Silver flowering stage	0.546
	SRR8316905	Silver flowering stage	0.219
	SRR8316906	Gold flowering stage	0.105
	SRR8316907	Gold flowering stage	0.298
	SRR8316908	Gold flowering stage	0.108
SRP132670	SRR6706286	Control	2.302
	SRR6706287	Light intensity 50%	2.672
	SRR6706288	Light intensity 20%	1.986
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.724
	CNS0095593	Slightly white alabastrum(diploid) 2	0.419
	CNS0095594	Slightly white alabastrum(diploid) 3	0.179
	CNS0095595	Whole white alabastrum(diploid) 2	3.673
	CNS0095596	Whole white alabastrum(diploid) 3	2.976
	CNS0095597	Whole white alabastrum(diploid) 4	5.452
	CNS0095598	Silvery flower (diploied) 1	0.711
	CNS0095599	Silvery flower (diploied) 2	1.835
	CNS0095600	Silvery flower (diploied) 3	0.680
	CNS0095601	Golden flower (diploid) 1	0.586
	CNS0095602	Golden flower (diploid) 2	0.440
	CNS0095603	Golden flower (diploid) 3	0.627
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.095
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.608
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.155
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.073
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.044
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.105
	CNS0095610	Silvery flower (tetraploid) 1	1.008
	CNS0095611	Silvery flower (tetraploid) 2	2.887
	CNS0095612	Silvery flower (tetraploid) 3	6.759
	CNS0095613	Golden flower (tetraploid) 1	1.281
	CNS0095614	Golden flower (tetraploid) 2	0.772
	CNS0095615	Golden flower (tetraploid) 3	2.514
CRA001975	CRR073297	Stem 1	0.855
	CRR073298	Stem 2	0.618
	CRR073299	Stem 3	0.226
	CRR073300	Leaf 1	2.482
	CRR073301	Leaf 2	1.118
	CRR073302	Leaf 3	0.108
	CRR073303	Juvenile bud 1	5.503
	CRR073304	Juvenile bud 2	8.992
	CRR073305	Juvenile bud 3	1.026
	CRR073306	Third green 1	8.461
	CRR073307	Third green 2	6.196
	CRR073308	Third green 3	6.645
	CRR073309	Second white 1	0.306
	CRR073310	Second white 2	1.055
	CRR073311	Second white 3	1.153
	CRR073312	Silver flowering 1	2.694
	CRR073313	Silver flowering 2	1.446
	CRR073314	Silver flowering 3	1.820
	CRR073315	Gold flowering 1	3.368
	CRR073316	Gold flowering 2	1.157
	CRR073317	Gold flowering 3	1.637
	CRR073318	Tawny withering 1	2.135
	CRR073319	Tawny withering 2	4.941
	CRR073320	Tawny withering 3	3.064