Detail information of GWHGAAZE000445


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO71194.11.19011E-24hypothetical protein CISIN_1g045569mg [Citrus sinensis]
trEMBLtr|A0A067FV09|A0A067FV09_CITSI4E-25Uncharacterized protein {ECO:0000313|EMBL:KDO71194.1}
TAIR10AT3G06240.10.00007F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene85705578572048-
GWHAAZE00000001mRNA85705578572048-
GWHAAZE00000001exon85705578571201-
GWHAAZE00000001exon85712578572048-
GWHAAZE00000001CDS85712578572048-
GWHAAZE00000001CDS85705578571201-
Transcript Sequence

Network for GWHGAAZE000445

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box45780.00025
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.082
SRR3591706second leaf0.263
SRR3591707mature leaf0.491
SRR3591708Shoot apex0.652
SRR3591709Stem0.444
SRR3591710White floral bud10.635
SRR3591711White flower5.442
SRR3591712Green floral bud7.137
SRR3591713Yellow flower2.753
SRP173429 SRR8316895Juvenile bud stage 7.436
SRR8316896Juvenile bud stage 10.523
SRR8316897Juvenile bud stage 3.736
SRR8316894Third green stage 3.878
SRR8316900Third green stage 6.003
SRR8316901Third green stage 5.528
SRR8316898Complete white stage 1.833
SRR8316899Complete white stage 6.574
SRR8316903Complete white stage 3.819
SRR8316902Silver flowering stage2.426
SRR8316904Silver flowering stage4.531
SRR8316905Silver flowering stage1.799
SRR8316906Gold flowering stage 4.508
SRR8316907Gold flowering stage 3.365
SRR8316908Gold flowering stage 5.795
SRP132670SRR6706286Control7.544
SRR6706287Light intensity 50%7.342
SRR6706288Light intensity 20%8.750
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.187
CNS0095593Slightly white alabastrum(diploid) 26.083
CNS0095594Slightly white alabastrum(diploid) 36.932
CNS0095595Whole white alabastrum(diploid) 24.829
CNS0095596Whole white alabastrum(diploid) 33.925
CNS0095597Whole white alabastrum(diploid) 44.379
CNS0095598Silvery flower (diploied) 13.665
CNS0095599Silvery flower (diploied) 22.484
CNS0095600Silvery flower (diploied) 34.117
CNS0095601Golden flower (diploid) 12.967
CNS0095602Golden flower (diploid) 23.520
CNS0095603Golden flower (diploid) 33.600
CNS0095604Slightly white alabastrum(tetraploid) 18.693
CNS0095605Slightly white alabastrum(tetraploid) 29.245
CNS0095606Slightly white alabastrum(tetraploid) 311.937
CNS0095607Whole white alabastrum(tetraploid) 15.847
CNS0095608Whole white alabastrum(tetraploid) 25.002
CNS0095609Whole white alabastrum(tetraploid) 311.042
CNS0095610Silvery flower (tetraploid) 111.153
CNS0095611Silvery flower (tetraploid) 26.214
CNS0095612Silvery flower (tetraploid) 39.580
CNS0095613Golden flower (tetraploid) 13.259
CNS0095614Golden flower (tetraploid) 210.525
CNS0095615Golden flower (tetraploid) 36.235
CRA001975CRR073297Stem 121.082
CRR073298Stem 216.446
CRR073299Stem 321.763
CRR073300Leaf 17.680
CRR073301Leaf 28.144
CRR073302Leaf 36.504
CRR073303Juvenile bud 15.413
CRR073304Juvenile bud 22.485
CRR073305Juvenile bud 36.154
CRR073306Third green 15.878
CRR073307Third green 211.163
CRR073308Third green 39.677
CRR073309Second white 16.125
CRR073310Second white 26.136
CRR073311Second white 37.042
CRR073312Silver flowering 13.738
CRR073313Silver flowering 23.121
CRR073314Silver flowering 32.836
CRR073315Gold flowering 10.066
CRR073316Gold flowering 20.735
CRR073317Gold flowering 30.244
CRR073318Tawny withering 11.212
CRR073319Tawny withering 21.423
CRR073320Tawny withering 31.247