Detail information of GWHGAAZE000451


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003635011.19.45552E-59PREDICTED: uncharacterized protein LOC100852917 [Vitis vinifera]
trEMBLtr|F6I6Z1|F6I6Z1_VITVI3E-59Putative uncharacterized protein {ECO:0000313|EMBL:CCB62709.1}
TAIR10AT3G25030.22E-21RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene87857678786886+
GWHAAZE00000001mRNA87857678786886+
GWHAAZE00000001exon87857678786228+
GWHAAZE00000001exon87864648786886+
GWHAAZE00000001CDS87857678786228+
GWHAAZE00000001CDS87864648786886+
Transcript Sequence

Network for GWHGAAZE000451

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_32432871.20E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.209
SRR3591706second leaf0.399
SRR3591707mature leaf0.361
SRR3591708Shoot apex1.115
SRR3591709Stem0.426
SRR3591710White floral bud2.168
SRR3591711White flower0.000
SRR3591712Green floral bud26.174
SRR3591713Yellow flower0.306
SRP173429 SRR8316895Juvenile bud stage 7.078
SRR8316896Juvenile bud stage 12.751
SRR8316897Juvenile bud stage 5.573
SRR8316894Third green stage 5.077
SRR8316900Third green stage 30.390
SRR8316901Third green stage 30.389
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.165
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control15.439
SRR6706287Light intensity 50%11.669
SRR6706288Light intensity 20%12.209
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.520
CNS0095593Slightly white alabastrum(diploid) 215.320
CNS0095594Slightly white alabastrum(diploid) 323.911
CNS0095595Whole white alabastrum(diploid) 233.069
CNS0095596Whole white alabastrum(diploid) 342.762
CNS0095597Whole white alabastrum(diploid) 431.941
CNS0095598Silvery flower (diploied) 10.461
CNS0095599Silvery flower (diploied) 20.484
CNS0095600Silvery flower (diploied) 30.186
CNS0095601Golden flower (diploid) 10.177
CNS0095602Golden flower (diploid) 20.006
CNS0095603Golden flower (diploid) 30.104
CNS0095604Slightly white alabastrum(tetraploid) 126.922
CNS0095605Slightly white alabastrum(tetraploid) 232.666
CNS0095606Slightly white alabastrum(tetraploid) 30.186
CNS0095607Whole white alabastrum(tetraploid) 148.162
CNS0095608Whole white alabastrum(tetraploid) 242.874
CNS0095609Whole white alabastrum(tetraploid) 325.810
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.078
CNS0095612Silvery flower (tetraploid) 30.646
CNS0095613Golden flower (tetraploid) 10.077
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.056
CRA001975CRR073297Stem 18.903
CRR073298Stem 26.372
CRR073299Stem 34.807
CRR073300Leaf 113.512
CRR073301Leaf 214.949
CRR073302Leaf 311.337
CRR073303Juvenile bud 15.142
CRR073304Juvenile bud 23.007
CRR073305Juvenile bud 30.000
CRR073306Third green 10.135
CRR073307Third green 20.700
CRR073308Third green 30.332
CRR073309Second white 10.000
CRR073310Second white 20.138
CRR073311Second white 30.250
CRR073312Silver flowering 10.812
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.122
CRR073315Gold flowering 10.557
CRR073316Gold flowering 21.262
CRR073317Gold flowering 32.022
CRR073318Tawny withering 10.113
CRR073319Tawny withering 20.254
CRR073320Tawny withering 30.000