Detail information of GWHGAAZE000454


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03899.17.03382E-35unnamed protein product [Coffea canephora]
trEMBLtr|A0A068U6S8|A0A068U6S8_COFCA3E-35Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03899.1}
TAIR10AT5G48655.30.000004RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene88027708804976+
GWHAAZE00000001mRNA88027708804976+
GWHAAZE00000001exon88027708803036+
GWHAAZE00000001exon88031348803191+
GWHAAZE00000001exon88035008803600+
GWHAAZE00000001exon88048908804976+
GWHAAZE00000001CDS88027708803036+
GWHAAZE00000001CDS88031348803191+
GWHAAZE00000001CDS88035008803600+
GWHAAZE00000001CDS88048908804976+
Transcript Sequence

Network for GWHGAAZE000454

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf89.135
SRR3591706second leaf11.985
SRR3591707mature leaf10.756
SRR3591708Shoot apex24.011
SRR3591709Stem43.782
SRR3591710White floral bud24.235
SRR3591711White flower41.442
SRR3591712Green floral bud21.619
SRR3591713Yellow flower31.462
SRP173429 SRR8316895Juvenile bud stage 74.611
SRR8316896Juvenile bud stage 90.129
SRR8316897Juvenile bud stage 60.332
SRR8316894Third green stage 11.929
SRR8316900Third green stage 24.176
SRR8316901Third green stage 55.603
SRR8316898Complete white stage 6.259
SRR8316899Complete white stage 73.070
SRR8316903Complete white stage 10.737
SRR8316902Silver flowering stage12.455
SRR8316904Silver flowering stage14.205
SRR8316905Silver flowering stage6.789
SRR8316906Gold flowering stage 23.372
SRR8316907Gold flowering stage 18.459
SRR8316908Gold flowering stage 27.154
SRP132670SRR6706286Control19.534
SRR6706287Light intensity 50%19.087
SRR6706288Light intensity 20%18.483
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.963
CNS0095593Slightly white alabastrum(diploid) 261.178
CNS0095594Slightly white alabastrum(diploid) 354.429
CNS0095595Whole white alabastrum(diploid) 249.675
CNS0095596Whole white alabastrum(diploid) 311.638
CNS0095597Whole white alabastrum(diploid) 432.321
CNS0095598Silvery flower (diploied) 182.574
CNS0095599Silvery flower (diploied) 2104.374
CNS0095600Silvery flower (diploied) 348.304
CNS0095601Golden flower (diploid) 169.239
CNS0095602Golden flower (diploid) 268.661
CNS0095603Golden flower (diploid) 366.398
CNS0095604Slightly white alabastrum(tetraploid) 19.905
CNS0095605Slightly white alabastrum(tetraploid) 29.383
CNS0095606Slightly white alabastrum(tetraploid) 313.972
CNS0095607Whole white alabastrum(tetraploid) 16.522
CNS0095608Whole white alabastrum(tetraploid) 26.487
CNS0095609Whole white alabastrum(tetraploid) 311.045
CNS0095610Silvery flower (tetraploid) 126.159
CNS0095611Silvery flower (tetraploid) 217.692
CNS0095612Silvery flower (tetraploid) 321.093
CNS0095613Golden flower (tetraploid) 122.881
CNS0095614Golden flower (tetraploid) 225.397
CNS0095615Golden flower (tetraploid) 324.375
CRA001975CRR073297Stem 121.587
CRR073298Stem 232.309
CRR073299Stem 323.722
CRR073300Leaf 135.866
CRR073301Leaf 255.098
CRR073302Leaf 320.609
CRR073303Juvenile bud 117.442
CRR073304Juvenile bud 233.896
CRR073305Juvenile bud 343.222
CRR073306Third green 112.296
CRR073307Third green 219.353
CRR073308Third green 315.543
CRR073309Second white 113.269
CRR073310Second white 215.656
CRR073311Second white 315.326
CRR073312Silver flowering 118.104
CRR073313Silver flowering 224.096
CRR073314Silver flowering 324.726
CRR073315Gold flowering 125.645
CRR073316Gold flowering 231.707
CRR073317Gold flowering 316.418
CRR073318Tawny withering 119.767
CRR073319Tawny withering 249.357
CRR073320Tawny withering 321.408