Gene detail

Detail information of GWHGAAZE000462

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010104178.1	0	Oleoyl-acyl carrier protein thioesterase [Morus notabilis]
Swissprot	tr\|Q42712\|FATA_CORSA	0	Oleoyl-acyl carrier protein thioesterase, chloroplastic (Precursor; Fragment)
trEMBL	tr\|W9RN81\|W9RN81_9ROSA	0	Oleoyl-acyl carrier protein thioesterase {ECO:0000313\|EMBL:EXB99110.1}
TAIR10	AT3G25110.1	3E-144	fatA acyl-ACP thioesterase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	8884217	8889817	-
GWHAAZE00000001	mRNA	8884217	8889817	-
GWHAAZE00000001	exon	8889485	8889817	-
GWHAAZE00000001	exon	8888496	8888629	-
GWHAAZE00000001	exon	8888281	8888394	-
GWHAAZE00000001	exon	8885653	8885748	-
GWHAAZE00000001	exon	8884981	8885068	-
GWHAAZE00000001	exon	8884655	8884723	-
GWHAAZE00000001	exon	8884217	8884483	-
GWHAAZE00000001	CDS	8889485	8889817	-
GWHAAZE00000001	CDS	8888496	8888629	-
GWHAAZE00000001	CDS	8888281	8888394	-
GWHAAZE00000001	CDS	8885653	8885748	-
GWHAAZE00000001	CDS	8884981	8885068	-
GWHAAZE00000001	CDS	8884655	8884723	-
GWHAAZE00000001	CDS	8884217	8884483	-

Transcript Sequence
>GWHTAAZE000464 ATGTTCAGAGCGTCAACAATCTCAACTACATGCAATGCCGCTCCGACCGACCAAATCCAAGCCCTAAATCAATGCCGATTCCTGAATCCCCTCCTATCAATTCGCAGCCGGAACGTCGCCGTGTCTCGCGGTCCAGTGAGAGCTCCGGTTCTGGCCGTGGCCACCGGTGAGCGGAAGGAGGCCACCGGTTTGGAGAAGAGCCTGGCGGACCGGCTCCGGTTGGGGAGCTTGACGGAAAATGGATTGTCGTATAAGGAGAAGTTTATAGTCAGGTCTTATGAGGTTGGGATTAACAAAACTGCTACTGTTGAAACAATTGCTAATCTCTTACAGGAGGTTGGATGTAACCATGCTCAGAGTGTTGGATTCTCTACTGACGGGTTTGCGACTACCCCCACCATGAGAAAATTGCATCTCATATGGGTGACTGCTCGTATGCACATTGAAATTTACAAATACCCAGCTTGGAGTGATGTTGTCGAAATTGAGACATGGTGCCAAAGCGAAGGAAGGATTGGTACTAGACGTGATTGGATTCTCAAAGACTATGCTAACGGAGAAGTCATTGGCAGGGCCACGAGCAAGTGGGTGATGATGAACCAAGATACTAGACGGCTGCAGAAAGTTAGTGATGATGTACGAGATGAATATTTAGTTTTCTGCCCGAAAACACTTCGATTAGCATTTCCTGAAGAGAAGAACAACAGCCAGAGGAAAATATCAAAGCTGGAGGATAATTCTCAGTTTTCCAGGCTTGGGCTGGTGCCAAGAAGAGCTGATCTTGACATGAACCAGCATGTAAACAATGTTACCTACATTGGCTGGGTTCTAGAGAGCATGCCGCAAGAAGTAATTGACACCCACGAACTGCAAACTATAACCTTGGATTATAGACGTGAATGTCAACACGATGATGTAGTTGATTCTCTCACTAGTCCAGAACCATTCGAGGATGGTTTAGTTTCAGAGCTTAAAGGATCTAATGGCTCTGTCACTGCAACAGACTTCTGTCAGTTCTTGCATTTGTTGAGATTATCAGGGGACAAGCTTGAAATAAACAGGGGCCGCACTGAATGGAGAAAGAAACCCGAGAAGAGATAA

Network for GWHGAAZE000462

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01643.18	Acyl-ACP_TE	81	361	1.80E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10782	FATA	Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016790	molecular_function	thiolester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.447
	SRR3591706	second leaf	37.148
	SRR3591707	mature leaf	8.179
	SRR3591708	Shoot apex	41.749
	SRR3591709	Stem	4.129
	SRR3591710	White floral bud	12.187
	SRR3591711	White flower	13.038
	SRR3591712	Green floral bud	15.031
	SRR3591713	Yellow flower	9.371
SRP173429	SRR8316895	Juvenile bud stage	16.442
	SRR8316896	Juvenile bud stage	20.152
	SRR8316897	Juvenile bud stage	7.313
	SRR8316894	Third green stage	4.774
	SRR8316900	Third green stage	20.595
	SRR8316901	Third green stage	15.808
	SRR8316898	Complete white stage	7.893
	SRR8316899	Complete white stage	12.741
	SRR8316903	Complete white stage	7.818
	SRR8316902	Silver flowering stage	2.489
	SRR8316904	Silver flowering stage	4.865
	SRR8316905	Silver flowering stage	1.641
	SRR8316906	Gold flowering stage	4.673
	SRR8316907	Gold flowering stage	5.301
	SRR8316908	Gold flowering stage	4.185
SRP132670	SRR6706286	Control	14.786
	SRR6706287	Light intensity 50%	14.468
	SRR6706288	Light intensity 20%	14.779
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.552
	CNS0095593	Slightly white alabastrum(diploid) 2	16.359
	CNS0095594	Slightly white alabastrum(diploid) 3	14.687
	CNS0095595	Whole white alabastrum(diploid) 2	10.723
	CNS0095596	Whole white alabastrum(diploid) 3	10.753
	CNS0095597	Whole white alabastrum(diploid) 4	13.383
	CNS0095598	Silvery flower (diploied) 1	19.940
	CNS0095599	Silvery flower (diploied) 2	18.962
	CNS0095600	Silvery flower (diploied) 3	14.297
	CNS0095601	Golden flower (diploid) 1	15.938
	CNS0095602	Golden flower (diploid) 2	19.904
	CNS0095603	Golden flower (diploid) 3	17.537
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.081
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.840
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.239
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.765
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.862
	CNS0095610	Silvery flower (tetraploid) 1	10.926
	CNS0095611	Silvery flower (tetraploid) 2	12.990
	CNS0095612	Silvery flower (tetraploid) 3	7.225
	CNS0095613	Golden flower (tetraploid) 1	6.150
	CNS0095614	Golden flower (tetraploid) 2	12.237
	CNS0095615	Golden flower (tetraploid) 3	3.819
CRA001975	CRR073297	Stem 1	38.114
	CRR073298	Stem 2	29.602
	CRR073299	Stem 3	25.575
	CRR073300	Leaf 1	17.965
	CRR073301	Leaf 2	17.112
	CRR073302	Leaf 3	19.784
	CRR073303	Juvenile bud 1	17.607
	CRR073304	Juvenile bud 2	17.713
	CRR073305	Juvenile bud 3	15.636
	CRR073306	Third green 1	4.528
	CRR073307	Third green 2	3.877
	CRR073308	Third green 3	4.160
	CRR073309	Second white 1	1.992
	CRR073310	Second white 2	2.372
	CRR073311	Second white 3	1.995
	CRR073312	Silver flowering 1	3.385
	CRR073313	Silver flowering 2	1.836
	CRR073314	Silver flowering 3	2.979
	CRR073315	Gold flowering 1	9.386
	CRR073316	Gold flowering 2	11.442
	CRR073317	Gold flowering 3	8.075
	CRR073318	Tawny withering 1	6.240
	CRR073319	Tawny withering 2	7.051
	CRR073320	Tawny withering 3	9.716