Detail information of GWHGAAZE000480


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011003113.10PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Populus euphratica]
Swissprottr|Q9SV68|QORH_ARATH7E-180Putative quinone-oxidoreductase homolog, chloroplastic
trEMBLtr|A0A068U8I9|A0A068U8I9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03928.1}
TAIR10AT4G13010.11E-135Oxidoreductase, zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene91233269127730-
GWHAAZE00000001mRNA91233269127730-
GWHAAZE00000001exon91276599127730-
GWHAAZE00000001exon91255939125734-
GWHAAZE00000001exon91249489125030-
GWHAAZE00000001exon91233269124265-
GWHAAZE00000001CDS91276599127730-
GWHAAZE00000001CDS91255939125734-
GWHAAZE00000001CDS91249489125030-
GWHAAZE00000001CDS91235769124265-
GWHAAZE00000001three_prime_UTR91233269123575-
Transcript Sequence

Network for GWHGAAZE000480

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08240.13ADH_N361003.80E-09
PF13602.7ADH_zinc_N_21973262.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00224CEQORH Biosynthesis of secondary metabolites map01110
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.441
SRR3591706second leaf15.711
SRR3591707mature leaf29.869
SRR3591708Shoot apex17.473
SRR3591709Stem34.461
SRR3591710White floral bud101.338
SRR3591711White flower53.644
SRR3591712Green floral bud62.346
SRR3591713Yellow flower45.027
SRP173429 SRR8316895Juvenile bud stage 27.273
SRR8316896Juvenile bud stage 26.126
SRR8316897Juvenile bud stage 15.796
SRR8316894Third green stage 7.168
SRR8316900Third green stage 24.593
SRR8316901Third green stage 28.406
SRR8316898Complete white stage 48.585
SRR8316899Complete white stage 127.359
SRR8316903Complete white stage 73.622
SRR8316902Silver flowering stage29.822
SRR8316904Silver flowering stage38.352
SRR8316905Silver flowering stage22.322
SRR8316906Gold flowering stage 46.447
SRR8316907Gold flowering stage 56.101
SRR8316908Gold flowering stage 42.575
SRP132670SRR6706286Control36.840
SRR6706287Light intensity 50%30.968
SRR6706288Light intensity 20%33.726
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.593
CNS0095593Slightly white alabastrum(diploid) 227.306
CNS0095594Slightly white alabastrum(diploid) 329.808
CNS0095595Whole white alabastrum(diploid) 227.263
CNS0095596Whole white alabastrum(diploid) 315.985
CNS0095597Whole white alabastrum(diploid) 427.492
CNS0095598Silvery flower (diploied) 1123.388
CNS0095599Silvery flower (diploied) 2105.358
CNS0095600Silvery flower (diploied) 3120.814
CNS0095601Golden flower (diploid) 1121.388
CNS0095602Golden flower (diploid) 2141.351
CNS0095603Golden flower (diploid) 3132.891
CNS0095604Slightly white alabastrum(tetraploid) 115.559
CNS0095605Slightly white alabastrum(tetraploid) 216.983
CNS0095606Slightly white alabastrum(tetraploid) 322.415
CNS0095607Whole white alabastrum(tetraploid) 116.076
CNS0095608Whole white alabastrum(tetraploid) 216.070
CNS0095609Whole white alabastrum(tetraploid) 320.224
CNS0095610Silvery flower (tetraploid) 185.783
CNS0095611Silvery flower (tetraploid) 2117.566
CNS0095612Silvery flower (tetraploid) 381.905
CNS0095613Golden flower (tetraploid) 147.833
CNS0095614Golden flower (tetraploid) 274.191
CNS0095615Golden flower (tetraploid) 333.317
CRA001975CRR073297Stem 136.893
CRR073298Stem 238.566
CRR073299Stem 344.150
CRR073300Leaf 118.933
CRR073301Leaf 218.212
CRR073302Leaf 320.677
CRR073303Juvenile bud 127.883
CRR073304Juvenile bud 248.434
CRR073305Juvenile bud 342.637
CRR073306Third green 118.434
CRR073307Third green 226.381
CRR073308Third green 321.396
CRR073309Second white 121.936
CRR073310Second white 218.969
CRR073311Second white 39.744
CRR073312Silver flowering 110.588
CRR073313Silver flowering 216.115
CRR073314Silver flowering 312.905
CRR073315Gold flowering 194.953
CRR073316Gold flowering 2144.460
CRR073317Gold flowering 3153.457
CRR073318Tawny withering 165.401
CRR073319Tawny withering 293.575
CRR073320Tawny withering 362.148