Detail information of GWHGAAZE000519


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007049567.12.588E-137Far-red impaired responsive family protein isoform 1 [Theobroma cacao]
Swissprottr|Q9SZL8|FRS5_ARATH2E-23Protein FAR1-RELATED SEQUENCE 5
trEMBLtr|A0A061DMV3|A0A061DMV3_THECC1E-137Far-red impaired responsive family protein isoform 1 {ECO:0000313|EMBL:EOX93727.1}
TAIR10AT2G43280.12E-27Far-red impaired responsive (FAR1) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1032054210321667-
GWHAAZE00000001mRNA1032054210321667-
GWHAAZE00000001exon1032054210320751-
GWHAAZE00000001exon1032111610321667-
GWHAAZE00000001CDS1032111610321667-
GWHAAZE00000001CDS1032054210320751-
Transcript Sequence

Network for GWHGAAZE000519

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1771673.80E-26
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.726
SRR3591706second leaf2.476
SRR3591707mature leaf3.452
SRR3591708Shoot apex4.427
SRR3591709Stem3.654
SRR3591710White floral bud4.922
SRR3591711White flower6.955
SRR3591712Green floral bud3.767
SRR3591713Yellow flower6.467
SRP173429 SRR8316895Juvenile bud stage 1.979
SRR8316896Juvenile bud stage 3.427
SRR8316897Juvenile bud stage 1.515
SRR8316894Third green stage 1.930
SRR8316900Third green stage 4.661
SRR8316901Third green stage 5.473
SRR8316898Complete white stage 1.326
SRR8316899Complete white stage 6.731
SRR8316903Complete white stage 2.475
SRR8316902Silver flowering stage1.559
SRR8316904Silver flowering stage4.749
SRR8316905Silver flowering stage2.140
SRR8316906Gold flowering stage 7.422
SRR8316907Gold flowering stage 5.306
SRR8316908Gold flowering stage 7.542
SRP132670SRR6706286Control0.422
SRR6706287Light intensity 50%0.727
SRR6706288Light intensity 20%0.427
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.864
CNS0095593Slightly white alabastrum(diploid) 23.765
CNS0095594Slightly white alabastrum(diploid) 32.833
CNS0095595Whole white alabastrum(diploid) 24.001
CNS0095596Whole white alabastrum(diploid) 33.304
CNS0095597Whole white alabastrum(diploid) 42.096
CNS0095598Silvery flower (diploied) 15.330
CNS0095599Silvery flower (diploied) 23.157
CNS0095600Silvery flower (diploied) 35.700
CNS0095601Golden flower (diploid) 15.935
CNS0095602Golden flower (diploid) 24.424
CNS0095603Golden flower (diploid) 35.238
CNS0095604Slightly white alabastrum(tetraploid) 13.724
CNS0095605Slightly white alabastrum(tetraploid) 22.318
CNS0095606Slightly white alabastrum(tetraploid) 34.191
CNS0095607Whole white alabastrum(tetraploid) 12.873
CNS0095608Whole white alabastrum(tetraploid) 21.579
CNS0095609Whole white alabastrum(tetraploid) 31.716
CNS0095610Silvery flower (tetraploid) 14.924
CNS0095611Silvery flower (tetraploid) 26.191
CNS0095612Silvery flower (tetraploid) 35.094
CNS0095613Golden flower (tetraploid) 16.610
CNS0095614Golden flower (tetraploid) 25.868
CNS0095615Golden flower (tetraploid) 35.301
CRA001975CRR073297Stem 11.237
CRR073298Stem 21.632
CRR073299Stem 30.368
CRR073300Leaf 10.955
CRR073301Leaf 21.106
CRR073302Leaf 31.271
CRR073303Juvenile bud 10.559
CRR073304Juvenile bud 20.241
CRR073305Juvenile bud 30.239
CRR073306Third green 10.210
CRR073307Third green 20.050
CRR073308Third green 30.222
CRR073309Second white 10.363
CRR073310Second white 20.596
CRR073311Second white 30.453
CRR073312Silver flowering 11.069
CRR073313Silver flowering 21.232
CRR073314Silver flowering 30.353
CRR073315Gold flowering 10.421
CRR073316Gold flowering 20.759
CRR073317Gold flowering 30.173
CRR073318Tawny withering 11.404
CRR073319Tawny withering 21.506
CRR073320Tawny withering 31.069