Gene detail

Detail information of GWHGAAZE000535

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010646075.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 [Vitis vinifera]
Swissprot	tr\|O22207\|UBP5_ARATH	Ubiquitin carboxyl-terminal hydrolase 5
trEMBL	tr\|D7U6B4\|D7U6B4_VITVI	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT2G40930.1	ubiquitin-specific protease 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	10714879	10726755	+
GWHAAZE00000001	mRNA	10714879	10726755	+
GWHAAZE00000001	exon	10714879	10715068	+
GWHAAZE00000001	exon	10718588	10718839	+
GWHAAZE00000001	exon	10719980	10720124	+
GWHAAZE00000001	exon	10720247	10720306	+
GWHAAZE00000001	exon	10720413	10720508	+
GWHAAZE00000001	exon	10721203	10721613	+
GWHAAZE00000001	exon	10722006	10722146	+
GWHAAZE00000001	exon	10722235	10722405	+
GWHAAZE00000001	exon	10723480	10723737	+
GWHAAZE00000001	exon	10723861	10724009	+
GWHAAZE00000001	exon	10724431	10724976	+
GWHAAZE00000001	exon	10725511	10725784	+
GWHAAZE00000001	exon	10726213	10726755	+
GWHAAZE00000001	five_prime_UTR	10714879	10714937	+
GWHAAZE00000001	CDS	10714938	10715068	+
GWHAAZE00000001	CDS	10718588	10718839	+
GWHAAZE00000001	CDS	10719980	10720124	+
GWHAAZE00000001	CDS	10720247	10720306	+
GWHAAZE00000001	CDS	10720413	10720508	+
GWHAAZE00000001	CDS	10721203	10721613	+
GWHAAZE00000001	CDS	10722006	10722146	+
GWHAAZE00000001	CDS	10722235	10722405	+
GWHAAZE00000001	CDS	10723480	10723737	+
GWHAAZE00000001	CDS	10723861	10724009	+
GWHAAZE00000001	CDS	10724431	10724976	+
GWHAAZE00000001	CDS	10725511	10725784	+
GWHAAZE00000001	CDS	10726213	10726395	+
GWHAAZE00000001	three_prime_UTR	10726396	10726755	+

Transcript Sequence
>GWHTAAZE000537 TATCTGATCTGATTCAAACAAACCTCCCTAAAAAAAAGTTTGTAGATAGAGAGAGAGAGATGGCGGAGGTGTTGATGTGCAGGTCATCTGAGCCGACGCCGGAGGAAGAGAAACTGACGATAAGGGACATTGCAATGGCTGCGGAATCTCAAACCAAAGAAGGAGATACCTTTTATTTAATCACTCAAAGATGGTGGCAAGATTGGCTCGAGTATGTGAACCAAAACCAGGCAACTTGTACAAACGATGGATCTTCTTTTGAGCATAATGATTTGGTTGGTTCAAGTACTACAAAGAAGCCTTCCGGTATTGATAATTCTGATTTAATCTATGAAGCAGCATTTGAAGCATCCACTACGGGTGTTGAGCTCCACGACACCTTAGTAGAAGGCACTGATTATATATTGCTTCCACAAGAAGTTTGGAATCAATTATATGCATGGTATGGAGGGGGTCCTACATTGGCACGAAAAGTAATAAATTCTGGTCTCTCTCAAACAGAATTGTCTGTAGAGGTGTATCCGCTGCGCCTTCAACTACATCTGATGCCTAAAGGCGACCAATCTGCTATAAGAATAAGCAAAAAGGAAAGGATTGGAGAACTTCACAGAAAAGCTTGCGAAATTTTTGATCTGAATTCAGATCAAGTGTGCGTTTGGGACTACTTCAGCCATCGAAAACATGCTTTGATGAATGACATGGATAAGACACTCGATGATGCGAACATACAGATGGATCAGGATATTCTGGTGGAGGTCACCGAAAACACTCATGGTTGTGGGAGTTTGGTTCATGAGAACGGATCTGCAGAGAATGAATCGGTGTTGGCTCTTGTAGTAGAGCCTTGTAAGGCAAGCCTTTCTACTGCAGGAGGTTTGGCTGCAAGCAAGGGTTTGTCTAGAAATGGCAATTCAGAGTTGTCACAGTTGCAAACTGGAACTTCTTCGGTTACAGAGCTGAATAATAAGACGCATGGGACTAGTGGTGTTAGTACGAGGGGGTCTTCTGCTGGCTTGACAGGGTTGTTGAACCTTGGAAACACATGCTTTATGAATAGTGCGATACAGTGCCTTGTTCATACGCCTGAGTTTGCTAGATACTTTCAAGAAGATTACCATCAAGAGATAAACTGGCATAACCCTTTGGGCATGGTTGGTGAGCTAGCCCTAGCATTTGGTGACTTACTTCGAAAGTTGTGGGCACCGGGACGAACTCCTGTTGCTCCTCGGGCATTTAAAGCAAAGCTTGCTCGCTTTGCACCTCAATTTAGTGGATATAATCAACATGATTCTCAGGAACTCCTTGCATTTCTGTTAGATGGGCTTCATGAAGATCTGAACCGGGTCAAGCACAAACCTTACATAAAATCCAGAGATGCAGATGGCCGACCCGATGAAGAAGTTGCTGACGAGTACTGGGCGAATCACATTGCTCGTAATGATTCCATAATTGTGGATGTGTGCCAAGGTCAATACAAGTCGACTTTAGTTTGTCCTGTATGTAATAAAATCTCCGTCACATTTGATCCCTTCATGTATCTTTCCTTGCCACTTCAGTCCACCAACACTCGTACAATGACGGTAACAGTTTTCACTTGCGATGGAAGTGCACTCCCAGCTGCTTGCACTGTAACTGTTCCAAAGCAGGGGCGTTGTAGGGATTTGATACAAGCACTTAGTAATGCTTGTTCATTAAAGCATAATGAGAAGCTTTTGCTCACAGAGATAAGGAGCCACTTGATTCATCGTTTCTTGGAAGATCCTTTAATGTCATTGTCATCCATCAAAGACGATGACCATCTTACGGCCTATAAGATTCCAAAGTTTGTGAAAAATTCCAAATTTCTTCAGCTGATTCACCGTCGTGAAGAACAGGAAACCGGAAATTCCCAGAGAACTATGGGGTGGAAGCCTTATGGAACACCTCTTGTTTCACCTATCTCGTGTGATGATGCTATTACAAGAGGCGATATACAGTTGATAGTTCACACAATGCTCTCTCCAATGCTACGAACTGAAAATCTTCGACATCCCGATGTATCTGATACTAACACATTATCAGAAGTTTCCGACCTGGACCCCAAATTAGTGGATTCAACACAGAAGAAGTCTGGCAGCACTAAACTGACAGCCTTGCCAAAGCTACCTCTGCAGTTGGTTGATGAGAACAATGCATGCATTGATCTATCGGTTGGAGAACAGAAGGCTGTTAAGTTCTCCTCATCATCAAAGTCAATACTAGTGTTTGTTGATTGGTCACAAAAGCTTTTGGGGAATTACGACACCCATTACCTGGAAAACTTACCAGAAGTTCTCAAGTATGGGCCTGTGGCTAAAAGAGCTCGTACGGAACCTCTCTCATTGTACACTTGCTTGGAAGCTTTTCTACGTGAAGAGCCATTGGTACCTGAAGATATGTGGTATTGTCCTCGATGCAAGGAGCGAAGGCAAGCAAGTAAGAAACTGGATCTATGGAGGCTACCTGAAGTGCTTGTGATCCATCTAAAGAGGTTCTCATACAGCAGGTCACTGAAGCATAAGCTAGAGACTTTCGTCAACTTCCCTATTCATGATTTCAATTTGACAAATTATGTAGCAAACAAGAGCAACACCCGGCATCAACTATACGAACTCTATGCCTTAACCAATCACTTCGGTGGCATGGGAAGTGGGCACTACACTGCTCATATTAAGCTTCTGGACGAGCATAGGTGGTACAATTTTGATGACAGCCACATCTCACCCATTAATGAAGAAGATGTAAAGTCGGCCTCGGCCTATGTACTATTTTATCGGAGGGTGAAAACTGATGATGCCACTGTGAGCAATGGAGCACAATCATCTGCAGGTCACACCAACTTTTCCTCTCAAAAGTAAATCACTAGAGAAATGTATAGTTCACAAACCAGAAAGAGTGAACTCCTGTTTGTGCGTACACTAATTTATATTGCTCTTGTGAAATATTTAAAAGTACAAGAGTTGTTGAAGAATGAACAGTTATCTTACTAGAGTAATACTATACTGTCTTATTGTACTACATTGTGGAACCACAAGAAATAAGCATATTTGTGGGGTTTTCCCACTGGGTAGCAAGTTTGTGTGTTTTGTTTTGCAATTCGGTACTTGCAGAAAAGCTAGTTTGGATAGAAAACAGTTGTATCCCTAACCTCTTTACTATATATGAATCTAAAGCTGGCAATCGATCAGGCCGGGTCCTGTTGTACTCGTGTTTTGCCT

Network for GWHGAAZE000535

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06337.13	DUSP	35	141	7.70E-24
PF00443.30	UCH	320	911	5.90E-86

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0004843	molecular_function	thiol-dependent ubiquitin-specific protease activity
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.367
	SRR3591706	second leaf	13.220
	SRR3591707	mature leaf	14.512
	SRR3591708	Shoot apex	20.699
	SRR3591709	Stem	23.012
	SRR3591710	White floral bud	22.025
	SRR3591711	White flower	24.496
	SRR3591712	Green floral bud	23.257
	SRR3591713	Yellow flower	18.439
SRP173429	SRR8316895	Juvenile bud stage	11.605
	SRR8316896	Juvenile bud stage	13.604
	SRR8316897	Juvenile bud stage	7.828
	SRR8316894	Third green stage	7.387
	SRR8316900	Third green stage	20.676
	SRR8316901	Third green stage	18.464
	SRR8316898	Complete white stage	6.539
	SRR8316899	Complete white stage	21.859
	SRR8316903	Complete white stage	12.757
	SRR8316902	Silver flowering stage	7.811
	SRR8316904	Silver flowering stage	12.472
	SRR8316905	Silver flowering stage	4.665
	SRR8316906	Gold flowering stage	17.300
	SRR8316907	Gold flowering stage	14.393
	SRR8316908	Gold flowering stage	16.068
SRP132670	SRR6706286	Control	17.420
	SRR6706287	Light intensity 50%	19.976
	SRR6706288	Light intensity 20%	20.625
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.271
	CNS0095593	Slightly white alabastrum(diploid) 2	13.796
	CNS0095594	Slightly white alabastrum(diploid) 3	15.826
	CNS0095595	Whole white alabastrum(diploid) 2	12.750
	CNS0095596	Whole white alabastrum(diploid) 3	12.265
	CNS0095597	Whole white alabastrum(diploid) 4	12.615
	CNS0095598	Silvery flower (diploied) 1	14.872
	CNS0095599	Silvery flower (diploied) 2	13.183
	CNS0095600	Silvery flower (diploied) 3	24.259
	CNS0095601	Golden flower (diploid) 1	11.877
	CNS0095602	Golden flower (diploid) 2	21.762
	CNS0095603	Golden flower (diploid) 3	19.646
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.640
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.873
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.855
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.852
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.023
	CNS0095610	Silvery flower (tetraploid) 1	23.685
	CNS0095611	Silvery flower (tetraploid) 2	25.056
	CNS0095612	Silvery flower (tetraploid) 3	18.035
	CNS0095613	Golden flower (tetraploid) 1	12.786
	CNS0095614	Golden flower (tetraploid) 2	21.823
	CNS0095615	Golden flower (tetraploid) 3	16.979
CRA001975	CRR073297	Stem 1	21.173
	CRR073298	Stem 2	18.711
	CRR073299	Stem 3	16.936
	CRR073300	Leaf 1	21.134
	CRR073301	Leaf 2	16.017
	CRR073302	Leaf 3	16.119
	CRR073303	Juvenile bud 1	17.374
	CRR073304	Juvenile bud 2	13.189
	CRR073305	Juvenile bud 3	21.263
	CRR073306	Third green 1	6.451
	CRR073307	Third green 2	5.182
	CRR073308	Third green 3	7.354
	CRR073309	Second white 1	7.980
	CRR073310	Second white 2	8.914
	CRR073311	Second white 3	9.116
	CRR073312	Silver flowering 1	5.490
	CRR073313	Silver flowering 2	7.633
	CRR073314	Silver flowering 3	5.738
	CRR073315	Gold flowering 1	7.727
	CRR073316	Gold flowering 2	14.724
	CRR073317	Gold flowering 3	9.431
	CRR073318	Tawny withering 1	15.382
	CRR073319	Tawny withering 2	14.533
	CRR073320	Tawny withering 3	13.602