Gene detail

Detail information of GWHGAAZE000536

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI34634.3	1.6632E-167	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9CAI3\|CADH1_ARATH	2E-157	Probable cinnamyl alcohol dehydrogenase 1
trEMBL	tr\|D7TVV9\|D7TVV9_VITVI	6E-168	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34634.3}
TAIR10	AT1G72680.1	1E-119	cinnamyl-alcohol dehydrogenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	10727195	10728886	-
GWHAAZE00000001	mRNA	10727195	10728886	-
GWHAAZE00000001	exon	10727195	10727539	-
GWHAAZE00000001	exon	10727630	10727895	-
GWHAAZE00000001	exon	10728085	10728314	-
GWHAAZE00000001	exon	10728478	10728591	-
GWHAAZE00000001	exon	10728692	10728819	-
GWHAAZE00000001	exon	10728884	10728886	-
GWHAAZE00000001	CDS	10728884	10728886	-
GWHAAZE00000001	CDS	10728692	10728819	-
GWHAAZE00000001	CDS	10728478	10728591	-
GWHAAZE00000001	CDS	10728085	10728314	-
GWHAAZE00000001	CDS	10727630	10727895	-
GWHAAZE00000001	CDS	10727195	10727539	-

Transcript Sequence
>GWHTAAZE000538 ATGGCTAATTTACAAATTAATGGTAGGGTTGGGTGCACGCAGGAAATTATGTCAGAAACAATGGAGGAATGCATTGGATGGGCAGCCAGGGATGAATCTGGACATCTATCACCTTACAGTTTCACACGTAGGGGCGTTGGAAGTGATGATGTGTATCTAAAGATCACCCACTGTGGAGTTTGTTATGCCGATGTAGTTTGGACAAGAAACAGACTTGGAGATTCCAAGTATCCTCTAGTCCCTGGACACGAGATAGTTGGGATTGTGAAGGAGGTAGGTTCCAATGTAGATGGCTTTAAAGTCGGTGACCATGTTGGGGTGGGTACATATCTGAATTCATGCAGAGACTGCGAGTATTGCAATATTTCGCAAGAAGTTCATTGCACTAAAGGAGTAGTCCGTACTTTCAACTCGTTGATGTGGATGGTACCATCACTAAAGGTGGATATTCTAGTTACTACGTCGTTGATCAAAGATGGGTACCCTCCAGAGTTTGCAGCACCATTGTTATGCGCTGGAATCACCGTTTATAGTCCGATGATTCGCCATAAGATGAACCAGCCCGGGATATCTCTTGGGGTCATTGGGCTAGGAGGACTTGGTCACATGGCAGTTAAGTTCGGGAAGGCATTCGGGTTGAGCATAACAGTTTTCAGTACCAGCATATATAAGAAAGATGAAGCACTAAATAAACTTGGAGCAGATAAATTCATCGTCTCAACAGATGAACAGCAAATGATGGCCGCTTCTAATTCTCTCAATTTCATAATCGACACTGCATCAGGGGACCACGCTTTCGATCCATACATGTCACTGTTGAAGACTGGTGGGACCCTTGTCTTGGTTGGCGCGCCAAGTGTCAAACTCAGTCCAATAAGTCTTATTAGGGGTATGAAGTCTATTTCAGGGAGTGCAACGGGCGGTATAAAGGAAACCCAAGAAATGTTGGAGTTTTGTGCTGCTAGCAAAATATACCCAGGGATTGAAATCATGCCAATTCAATATATAAACAAAGCACTCGAGCGCCTAATAAAGAGGGATGTGAAGTATCGCTTCGTTATTGACATCGAGAAATCCTTGAAGTAA

Network for GWHGAAZE000536

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	49	133	2.70E-21
PF00107.27	ADH_zinc_N	199	320	9.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00083	CAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.273
	SRR3591706	second leaf	0.046
	SRR3591707	mature leaf	0.137
	SRR3591708	Shoot apex	0.179
	SRR3591709	Stem	0.219
	SRR3591710	White floral bud	0.512
	SRR3591711	White flower	1.412
	SRR3591712	Green floral bud	0.289
	SRR3591713	Yellow flower	0.682
SRP173429	SRR8316895	Juvenile bud stage	0.073
	SRR8316896	Juvenile bud stage	0.259
	SRR8316897	Juvenile bud stage	0.042
	SRR8316894	Third green stage	0.102
	SRR8316900	Third green stage	0.338
	SRR8316901	Third green stage	0.209
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.270
	SRR8316903	Complete white stage	0.047
	SRR8316902	Silver flowering stage	0.143
	SRR8316904	Silver flowering stage	0.074
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.318
	SRR8316907	Gold flowering stage	0.103
	SRR8316908	Gold flowering stage	0.076
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.038
	SRR6706288	Light intensity 20%	0.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.318
	CNS0095593	Slightly white alabastrum(diploid) 2	1.108
	CNS0095594	Slightly white alabastrum(diploid) 3	0.984
	CNS0095595	Whole white alabastrum(diploid) 2	2.033
	CNS0095596	Whole white alabastrum(diploid) 3	0.102
	CNS0095597	Whole white alabastrum(diploid) 4	0.607
	CNS0095598	Silvery flower (diploied) 1	0.368
	CNS0095599	Silvery flower (diploied) 2	0.267
	CNS0095600	Silvery flower (diploied) 3	0.241
	CNS0095601	Golden flower (diploid) 1	0.523
	CNS0095602	Golden flower (diploid) 2	0.219
	CNS0095603	Golden flower (diploid) 3	0.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.642
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.144
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.418
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.124
	CNS0095611	Silvery flower (tetraploid) 2	0.475
	CNS0095612	Silvery flower (tetraploid) 3	0.048
	CNS0095613	Golden flower (tetraploid) 1	0.493
	CNS0095614	Golden flower (tetraploid) 2	0.034
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.083
	CRR073298	Stem 2	0.068
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.199
	CRR073301	Leaf 2	0.180
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.111
	CRR073305	Juvenile bud 3	0.059
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.022
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.044
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.043
	CRR073318	Tawny withering 1	0.104
	CRR073319	Tawny withering 2	0.187
	CRR073320	Tawny withering 3	0.000