Gene detail

Detail information of GWHGAAZE000603

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006468162.1	0	PREDICTED: peroxidase 4-like [Citrus sinensis]
Swissprot	tr\|A7NY33\|PER4_VITVI	3E-175	Peroxidase 4 {ECO:0000250\|UniProtKB:Q42578} (Precursor)
trEMBL	tr\|A0A067DSE4\|A0A067DSE4_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO41521.1}
TAIR10	AT5G05340.1	7E-125	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	12340651	12342639	-
GWHAAZE00000001	mRNA	12340651	12342639	-
GWHAAZE00000001	exon	12342481	12342639	-
GWHAAZE00000001	exon	12342028	12342219	-
GWHAAZE00000001	exon	12341638	12341806	-
GWHAAZE00000001	exon	12340651	12341042	-
GWHAAZE00000001	CDS	12342481	12342639	-
GWHAAZE00000001	CDS	12342028	12342219	-
GWHAAZE00000001	CDS	12341638	12341806	-
GWHAAZE00000001	CDS	12340651	12341042	-

Transcript Sequence
>GWHTAAZE000605 ATGGGTAGCTCTTATGCTCAACTTTCAACTAATTTCTACTCCAAAACTTGTCCCAAGGTGTTTAGTACCGTACATTCGGAGGTTCAGTCTGCCGTCTCTAAGGAAAATCGCATGGGCGCGTCTCTCCTTCGCCTCCATTTCCATGACTGCTTTGTCAATGGTTGCGATGGGTCAATACTATTGGACGACACATCTTCGTTCACAGGGGAGAAAACTTCTGGTCCCAACAATAATTCTGTTAGAGGATTTAATGTAATCGATAATATTAAGAAAAAGGTGGAAGCAGTGTGCCCAGGTGTGGTCTCGTGCGCTGATATCGTAGCTATTGCAGCTCGCGACTCTGTCACCCTTCTGGGAGGACCAAGTTGGAATGTGAAGGTAGGAAGAAGGGACTCAAAAACAGCAAGCCTTTCTGCAGCCAATAGTGGGGTGATACCACCTCCCACTTCTACCCTCTCCAATCTCATCAATAGATTTCAAGCTGTTGGTCTCTCTGCCAAGGACATGGTTGCCCTTTCTGGATCGCATACAATCGGTAAAGCAAGATGTACAACGTTTAGAGCACGTGTACATAATGAGACCAACATAGACTCTTCCTTTGCCCGGGCAAGACAGGGCAACTGCCCCATAACCGCAGGGTCAGGGGACAACAATTTGGCACCTTTGGACATTCAAAGCCCAACTTCATTTGACAACAACTACTACAAGAACCTCATCAACAAAAGGGGCCTTTTACACTCTGACCAACAGCTTCACAGTGGTGGGTCCACCAATTCCCAAGTTGAAACTTACAGCAGAAATGCAAACACTTTCAACTCTGATTTTGCTGCTGCTATGATCAAGATGGGTGATATTAGTCCCCTCACTGGATCCAATGGCGAGATTAGGAAGAATTGCAGGAAGCCCAATTAA

Network for GWHGAAZE000603

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	25	267	1.40E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006979	biological_process	response to oxidative stress
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.062
	SRR3591706	second leaf	0.124
	SRR3591707	mature leaf	2.343
	SRR3591708	Shoot apex	0.454
	SRR3591709	Stem	4.093
	SRR3591710	White floral bud	11.549
	SRR3591711	White flower	59.777
	SRR3591712	Green floral bud	2.935
	SRR3591713	Yellow flower	240.087
SRP173429	SRR8316895	Juvenile bud stage	0.162
	SRR8316896	Juvenile bud stage	3.332
	SRR8316897	Juvenile bud stage	1.060
	SRR8316894	Third green stage	0.292
	SRR8316900	Third green stage	0.204
	SRR8316901	Third green stage	0.753
	SRR8316898	Complete white stage	11.843
	SRR8316899	Complete white stage	2.369
	SRR8316903	Complete white stage	7.018
	SRR8316902	Silver flowering stage	9.481
	SRR8316904	Silver flowering stage	19.102
	SRR8316905	Silver flowering stage	8.734
	SRR8316906	Gold flowering stage	75.453
	SRR8316907	Gold flowering stage	70.613
	SRR8316908	Gold flowering stage	192.998
SRP132670	SRR6706286	Control	7.021
	SRR6706287	Light intensity 50%	3.441
	SRR6706288	Light intensity 20%	1.444
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.792
	CNS0095593	Slightly white alabastrum(diploid) 2	0.846
	CNS0095594	Slightly white alabastrum(diploid) 3	2.845
	CNS0095595	Whole white alabastrum(diploid) 2	0.293
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.094
	CNS0095598	Silvery flower (diploied) 1	6.967
	CNS0095599	Silvery flower (diploied) 2	3.288
	CNS0095600	Silvery flower (diploied) 3	4.901
	CNS0095601	Golden flower (diploid) 1	26.362
	CNS0095602	Golden flower (diploid) 2	14.547
	CNS0095603	Golden flower (diploid) 3	19.300
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.554
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.107
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.781
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.260
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.390
	CNS0095610	Silvery flower (tetraploid) 1	10.799
	CNS0095611	Silvery flower (tetraploid) 2	4.142
	CNS0095612	Silvery flower (tetraploid) 3	13.217
	CNS0095613	Golden flower (tetraploid) 1	15.581
	CNS0095614	Golden flower (tetraploid) 2	25.704
	CNS0095615	Golden flower (tetraploid) 3	10.328
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.173
	CRR073299	Stem 3	0.275
	CRR073300	Leaf 1	0.432
	CRR073301	Leaf 2	0.862
	CRR073302	Leaf 3	0.492
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.290
	CRR073305	Juvenile bud 3	1.151
	CRR073306	Third green 1	0.918
	CRR073307	Third green 2	1.612
	CRR073308	Third green 3	2.911
	CRR073309	Second white 1	4.969
	CRR073310	Second white 2	13.260
	CRR073311	Second white 3	10.614
	CRR073312	Silver flowering 1	35.211
	CRR073313	Silver flowering 2	42.562
	CRR073314	Silver flowering 3	29.567
	CRR073315	Gold flowering 1	1.446
	CRR073316	Gold flowering 2	1.366
	CRR073317	Gold flowering 3	18.466
	CRR073318	Tawny withering 1	169.240
	CRR073319	Tawny withering 2	176.818
	CRR073320	Tawny withering 3	31.376