Detail information of GWHGAAZE000621


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09207.15.97079E-60unnamed protein product [Coffea canephora]
Swissprottr|F4KBP5|CHR4_ARATH0.0000001Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|M1BZW1|M1BZW1_SOLTU1E-60Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400056778}
TAIR10AT5G58610.14E-36PHD finger transcription factor, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1277765512780045+
GWHAAZE00000001mRNA1277765512780045+
GWHAAZE00000001exon1277765512779361+
GWHAAZE00000001exon1277970712780045+
GWHAAZE00000001CDS1277765512779361+
GWHAAZE00000001CDS1277970712780045+
Transcript Sequence

Network for GWHGAAZE000621

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16135.6TDBD4665158.90E-22
PF00628.30PHD5415832.50E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.646
SRR3591706second leaf1.983
SRR3591707mature leaf0.385
SRR3591708Shoot apex4.017
SRR3591709Stem1.423
SRR3591710White floral bud1.114
SRR3591711White flower0.651
SRR3591712Green floral bud1.450
SRR3591713Yellow flower0.337
SRP173429 SRR8316895Juvenile bud stage 1.548
SRR8316896Juvenile bud stage 2.200
SRR8316897Juvenile bud stage 0.494
SRR8316894Third green stage 0.811
SRR8316900Third green stage 2.068
SRR8316901Third green stage 2.190
SRR8316898Complete white stage 0.132
SRR8316899Complete white stage 1.106
SRR8316903Complete white stage 0.987
SRR8316902Silver flowering stage0.197
SRR8316904Silver flowering stage0.050
SRR8316905Silver flowering stage0.045
SRR8316906Gold flowering stage 0.020
SRR8316907Gold flowering stage 0.066
SRR8316908Gold flowering stage 0.205
SRP132670SRR6706286Control0.391
SRR6706287Light intensity 50%0.797
SRR6706288Light intensity 20%0.720
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.098
CNS0095593Slightly white alabastrum(diploid) 21.509
CNS0095594Slightly white alabastrum(diploid) 32.335
CNS0095595Whole white alabastrum(diploid) 22.452
CNS0095596Whole white alabastrum(diploid) 31.949
CNS0095597Whole white alabastrum(diploid) 41.577
CNS0095598Silvery flower (diploied) 11.121
CNS0095599Silvery flower (diploied) 20.653
CNS0095600Silvery flower (diploied) 30.630
CNS0095601Golden flower (diploid) 10.950
CNS0095602Golden flower (diploid) 21.061
CNS0095603Golden flower (diploid) 30.587
CNS0095604Slightly white alabastrum(tetraploid) 12.382
CNS0095605Slightly white alabastrum(tetraploid) 21.877
CNS0095606Slightly white alabastrum(tetraploid) 32.259
CNS0095607Whole white alabastrum(tetraploid) 11.924
CNS0095608Whole white alabastrum(tetraploid) 22.712
CNS0095609Whole white alabastrum(tetraploid) 31.962
CNS0095610Silvery flower (tetraploid) 10.202
CNS0095611Silvery flower (tetraploid) 20.654
CNS0095612Silvery flower (tetraploid) 30.463
CNS0095613Golden flower (tetraploid) 10.185
CNS0095614Golden flower (tetraploid) 20.082
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.803
CRR073298Stem 21.693
CRR073299Stem 31.209
CRR073300Leaf 12.626
CRR073301Leaf 22.402
CRR073302Leaf 31.402
CRR073303Juvenile bud 11.653
CRR073304Juvenile bud 20.644
CRR073305Juvenile bud 31.751
CRR073306Third green 10.163
CRR073307Third green 20.402
CRR073308Third green 30.544
CRR073309Second white 10.019
CRR073310Second white 20.166
CRR073311Second white 30.152
CRR073312Silver flowering 10.692
CRR073313Silver flowering 20.089
CRR073314Silver flowering 30.319
CRR073315Gold flowering 11.975
CRR073316Gold flowering 23.711
CRR073317Gold flowering 31.983
CRR073318Tawny withering 12.454
CRR073319Tawny withering 22.043
CRR073320Tawny withering 31.256