Gene detail

Detail information of GWHGAAZE000631

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004294789.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45840-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|C0LGU7\|Y5458_ARATH	4E-157	Probable LRR receptor-like serine/threonine-protein kinase At5g45840 (Precursor)
trEMBL	tr\|B9HNB7\|B9HNB7_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE87191.2}
TAIR10	AT2G40270.2	1E-115	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	12938015	12942363	+
GWHAAZE00000001	mRNA	12938015	12942363	+
GWHAAZE00000001	exon	12938015	12938040	+
GWHAAZE00000001	exon	12938158	12938229	+
GWHAAZE00000001	exon	12938326	12938469	+
GWHAAZE00000001	exon	12938556	12938696	+
GWHAAZE00000001	exon	12939558	12939592	+
GWHAAZE00000001	exon	12939668	12940048	+
GWHAAZE00000001	exon	12940595	12940789	+
GWHAAZE00000001	exon	12940889	12941017	+
GWHAAZE00000001	exon	12941762	12942363	+
GWHAAZE00000001	CDS	12938015	12938040	+
GWHAAZE00000001	CDS	12938158	12938229	+
GWHAAZE00000001	CDS	12938326	12938469	+
GWHAAZE00000001	CDS	12938556	12938696	+
GWHAAZE00000001	CDS	12939558	12939592	+
GWHAAZE00000001	CDS	12939668	12940048	+
GWHAAZE00000001	CDS	12940595	12940789	+
GWHAAZE00000001	CDS	12940889	12941017	+
GWHAAZE00000001	CDS	12941762	12942363	+

Transcript Sequence
>GWHTAAZE000633 ATGATTAGGATTAGTATTAGGAACAGGAATTTAAAGGATCTGTGTCTTGGAGGAACACTGGCACCTGAACTCGGCAAGCTTACTTGTTTGAAATCTATTATTTTACGCAACAATTCTCTTTGGGGTAACATTCCTAGTGAAATTGGAGAACTACAGGAGCTGGAAGTTTTGGATTTGGGATACAATAACTTCAGCGGGCCACTTCCGTTCAATCTTGGAAATAATCTTTCCCTGTCAATCCTTTTACTGGATAACAATGAGTTTCTTAGTCACATCTCTCTTGAACTTTCTGAACTTAAGATGCTTTCTGAATTTCAAGTAGATGAGAACCAGCTAACTGGTGCTGCTTCTGGTGCTAATTGCAATTGCAGGTCGGGTTCTTGGAAAATTGAGCAACCAGGAGCTATAGCTCAGCGGGGTGCACCGTTAGCATCGATATCATATCCCCCATCATCTATATCATCCCCAACAGAGCCTCCATCTTTTTCCCCATCAGAATCTTTGGCCCCTTCCCCCTCTCCAATGCTTCCACCAAGTCCAGCAAATCTACCCATTGATGATTCTAAATCCCCACAAGCAGATCCTGCTCCACTTCCTTCCCCTGCTTCAACTCCAAGTCCAGCAAAGAGTTCCAAGTCAAAGCATCACACAGTTCTGATATGGTCTGGAGTGGTAGGGGGTTCTCTTTCTGTGTTTATTTCAGCAGTTGGTCTTGTTTTCTGGCGAAGAAAGAAGGTGGTTACTGTCAACCCTTGGGCCACAGGTTTAAGTGGGCAGCTGCAGAAAGCATTCGTAACAGGTGTACCAAAGCTACAGCGATCAGAACTTGAAACAGCCTGTGAAGATTTTAGTAACATAATTGGATCTTTATCAGATGGGACAGTATACAAAGGAACTCTTTCAAGCGGAGTTGAAATAGGAGTGACATCTACTGCAGTAAAGTCAGCAAATGACTGGTCAGAGAATTTAGAAGCCCAATTCAGAAACAAGGCACACACGCTGTCAAAGGTGAACCACAAGAACTTTGTAAACCTTATCGGGTTTTGTGAAGAAGAGAAGCCTTTCACGAGAATGATGGTTTTTGAGTATGCTCCAAATGGAACGTTGTTTGAGCATCTACACATCAAAGAAGCAGAGCACTTGGACTGGGGAATGCGACTGCGAATAGCTATGGGCATGTCATACTGCCTTGAGTATATGCACCAACTCACCCCACCCATAGCCCATGCAAACCTACAGTCTTCATCTGTATATCTAACTGAAGACTACGCAGCCAAGCTGTCCGATTTCAGCTTTTGGAACGAATCAACTGCTTCAAAGATGAATTCAGCTACCATGGACCTCTTGGATACCCTGCCATCAGATCCTGAAAGCAATGTGTATAGCTTTGGGGTAATATTGTTTGAAATGATTACAGGTCGGCTTCCATATTCGGTGGGTAATGGGTCAATGTTTGACTGGGCTTCGGACTACCTAAAGGGAGCACAAGATCAACCCTTTAAAGAAATAGTGGATCCAACTTTGAATTCTTTCCGAGAGGAAGAGGTTGAGAAACTGTTTGAAGTGGTGAAAGATTGCGTTTGTCCTGACCCAAATCAGAGACCGAAAATGAGAGAGGTCTCATCCAGGTTGAAGGAGATCACGGCAATGGGGCCTGATGGGGCGACACCAAAAGTATCTCCTCTTTGGTGGGCGGAACTCGAGATTTTGTCGATGGAATCATAA

Network for GWHGAAZE000631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	284	544	2.40E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VI-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.603
	SRR3591706	second leaf	6.594
	SRR3591707	mature leaf	7.803
	SRR3591708	Shoot apex	4.949
	SRR3591709	Stem	150.216
	SRR3591710	White floral bud	10.677
	SRR3591711	White flower	5.825
	SRR3591712	Green floral bud	6.197
	SRR3591713	Yellow flower	5.778
SRP173429	SRR8316895	Juvenile bud stage	5.800
	SRR8316896	Juvenile bud stage	7.140
	SRR8316897	Juvenile bud stage	1.043
	SRR8316894	Third green stage	3.094
	SRR8316900	Third green stage	5.613
	SRR8316901	Third green stage	6.531
	SRR8316898	Complete white stage	4.323
	SRR8316899	Complete white stage	10.971
	SRR8316903	Complete white stage	6.758
	SRR8316902	Silver flowering stage	3.949
	SRR8316904	Silver flowering stage	4.153
	SRR8316905	Silver flowering stage	2.534
	SRR8316906	Gold flowering stage	16.477
	SRR8316907	Gold flowering stage	11.186
	SRR8316908	Gold flowering stage	16.111
SRP132670	SRR6706286	Control	8.197
	SRR6706287	Light intensity 50%	7.840
	SRR6706288	Light intensity 20%	6.505
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.124
	CNS0095593	Slightly white alabastrum(diploid) 2	4.114
	CNS0095594	Slightly white alabastrum(diploid) 3	4.941
	CNS0095595	Whole white alabastrum(diploid) 2	2.658
	CNS0095596	Whole white alabastrum(diploid) 3	3.233
	CNS0095597	Whole white alabastrum(diploid) 4	3.279
	CNS0095598	Silvery flower (diploied) 1	3.102
	CNS0095599	Silvery flower (diploied) 2	3.321
	CNS0095600	Silvery flower (diploied) 3	6.537
	CNS0095601	Golden flower (diploid) 1	3.258
	CNS0095602	Golden flower (diploid) 2	6.228
	CNS0095603	Golden flower (diploid) 3	5.347
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.997
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.886
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.270
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.678
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.513
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.846
	CNS0095610	Silvery flower (tetraploid) 1	3.935
	CNS0095611	Silvery flower (tetraploid) 2	2.411
	CNS0095612	Silvery flower (tetraploid) 3	1.700
	CNS0095613	Golden flower (tetraploid) 1	2.508
	CNS0095614	Golden flower (tetraploid) 2	3.931
	CNS0095615	Golden flower (tetraploid) 3	1.945
CRA001975	CRR073297	Stem 1	7.587
	CRR073298	Stem 2	7.615
	CRR073299	Stem 3	8.537
	CRR073300	Leaf 1	5.265
	CRR073301	Leaf 2	4.594
	CRR073302	Leaf 3	5.867
	CRR073303	Juvenile bud 1	4.657
	CRR073304	Juvenile bud 2	11.545
	CRR073305	Juvenile bud 3	5.570
	CRR073306	Third green 1	9.854
	CRR073307	Third green 2	7.308
	CRR073308	Third green 3	9.663
	CRR073309	Second white 1	2.935
	CRR073310	Second white 2	5.309
	CRR073311	Second white 3	5.598
	CRR073312	Silver flowering 1	8.740
	CRR073313	Silver flowering 2	6.310
	CRR073314	Silver flowering 3	4.368
	CRR073315	Gold flowering 1	7.480
	CRR073316	Gold flowering 2	9.862
	CRR073317	Gold flowering 3	7.450
	CRR073318	Tawny withering 1	42.333
	CRR073319	Tawny withering 2	42.835
	CRR073320	Tawny withering 3	81.958