Gene detail

Detail information of GWHGAAZE000645

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI15934.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	0.00000009	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|I1LLM4\|I1LLM4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G27510.1}
TAIR10	AT5G58610.1	1E-173	PHD finger transcription factor, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13169915	13183294	-
GWHAAZE00000001	mRNA	13169915	13183294	-
GWHAAZE00000001	exon	13169915	13170249	-
GWHAAZE00000001	exon	13170348	13170426	-
GWHAAZE00000001	exon	13171271	13171400	-
GWHAAZE00000001	exon	13171511	13171721	-
GWHAAZE00000001	exon	13172812	13172911	-
GWHAAZE00000001	exon	13172998	13173084	-
GWHAAZE00000001	exon	13173565	13173815	-
GWHAAZE00000001	exon	13174387	13174475	-
GWHAAZE00000001	exon	13174583	13174712	-
GWHAAZE00000001	exon	13175139	13177316	-
GWHAAZE00000001	exon	13183226	13183294	-
GWHAAZE00000001	CDS	13183226	13183294	-
GWHAAZE00000001	CDS	13175139	13177316	-
GWHAAZE00000001	CDS	13174583	13174712	-
GWHAAZE00000001	CDS	13174387	13174475	-
GWHAAZE00000001	CDS	13173565	13173815	-
GWHAAZE00000001	CDS	13172998	13173084	-
GWHAAZE00000001	CDS	13172812	13172911	-
GWHAAZE00000001	CDS	13171511	13171721	-
GWHAAZE00000001	CDS	13171271	13171400	-
GWHAAZE00000001	CDS	13170348	13170426	-
GWHAAZE00000001	CDS	13170094	13170249	-
GWHAAZE00000001	three_prime_UTR	13169915	13170093	-

Transcript Sequence
>GWHTAAZE000647 ATGCGTGGGAAGGGATCTGTGACAGTGGGAAAGCCGAAGAGATTTGAGAGAGGTGTGGGTGTGGGAGAGGTACGGGGTATCGAAGAGGGTTTTCGGGGTTCTTGGCATTCTGGAACTGTAATTGCATGTCAAGATAGAAAACGTACGGTCAAATATGACCATCTTCTAAGCGAGGATGGCACTGGTAGACTTACCGATACTCTAGTAGTTTCTCCGGTTATAAGGCCTTTGCCGCCTCCTGTTGATGTTAACAAACAGTATCTTCACTATGGTCAGTGTGTTGATGTGTTTCACAATGAAGCGTGGTGGGAAGGCGTGGTTATTGACCACGAAGTTGGAGCGTCGGATAGGATGATTTTCTTTCCCGACATGGGTGATGAAATTAAGGCCTCGATTGATATTTTAAGGATCACCCAAGATTGGGATGACGTTAATGAAGAGTGGAAGCCTCGAGGGAACTGGTTGTTTCTTGAAGTGATTGAGGAAACCGAAAAAGAGTGGCCTGTTGTTGTTTCGGTGAAGCAAATTTGGTATGAAGTGAGGGGTAAAAAGGGTTTTGAGGATCTCAACGAGTGGACCTGTTCTGTTAGGGATGTTTGGAAAGATTTAGTTTTGGAGGTTATTGTGGATTATTTTAAGTTAACAGTAACTGAAATTTTCCGCAATTTAAACCCTAAAGGTGACTCGGAAGAGAGGAAAGAGAAAATCGAGCCATTCTTGGATTGTATTGAACCGGCTTTTTATCTTTCAGTTTCGGATTTAGGCTTCGATAATACTTGCCAGTTGAGTCACTTGCCTCCAAATGATCCTAGTCAACTTGTTCAGGAAAGTGAGTTCAAAGAGGAATTGGCATCTGTAATGGAGGGTGGTAGCTTTATGAGTCTATTGACTAGCTCACTAAATCCCCCTCACGTTGAATCCCAGCCTCCAGCTTTGTCATTTTTTCCTTGTAATGCAAGTGATACTTGTCAGGTTAGTTCAAAAATATTCAAACAAAAGTTGGACAAACCTGCATGGCATATTGCAGGCCCTGACTTGGTTCCTAAAGCTGAATACTGCCCAAATGCAATCACTGATTTCAATAATAAATATACGTCTGGCAGTAAACCTTCATCTGCTGAAATGTTGAACGTGAGAAAACATCTTTCCTTCTTGGGATGGAGAATCGAGCATGTGCGTGAAAATAAAGGCAAATCGAAATTTCGCTACTTCTCACCTGAGGCTAAGCCCAAGTGTTACTATTCGCTCCATTTGCTATGCAAGGATTACAATTTGCTATGCAAGGATTTCGTCGAATCTCCTTCGGGTATATTTTCTTTGACCCCCCAAAATGATCAGAATGACCAAAGAAGTTTAGCACTCATTGAACAACCACAGGTGCCCGAGGATTTGAGAGATTCTTCAATGGGAATACTTTCTTTGGTTCCCCAAGATGGCCAAGAAAGTTTAGCCAATACACCCAATAGTCCTTTCTCAGAGGCATTTGAGGATGAACTAACTGAGCCCGTATACTGCCCTCAAGCTATAGTGGACTATTGTTTGCTAGGCGACAGCATAAGATGGATCCGAAAGAACGACAGGAAGATTAAACATTTGAGGGTGAAAGTAAAGAAGCACCTGCGTTCTGTTGGGTGGTCGTTCTTTTACACAAAAAAGGGAAGTAGACGTGAATTACGGTACAAGTCACCTAGTGGAAGGGTTTATATCTCACTTATAACCGCTTGCCAAAGCTATATGGCCGAAGATGGAAAATCTGATCAAAAGGCTCATGCATCTACTAGAAGAAAGCGGTCAAGCATAAGAGCTCGGCAGGCAGTGGCTCCTTCTCACCACATGCCTCGAACTATCTTGTGTTGGTTAATTGACAACAGTGTGGTTTTGGCAGGCGAAAAAGTATATTATCATGGTAAAAATGCAGAAGGGCGTGTAACTCGTGAAGGGATCATGTGCAACTGTTGCCAATGTACTTTTACTCTTACTGAATTCGAAACTCATGTGGGTAGCAAGAACCATAGACCAGCGGCCAATATATATTTGGACGATGGTAGATCCCTTTTAGATTGTCAACAGGAATTAAAACGTGTTAGTAATAGAGGGAAACACTTGAGTATGGAGCCGCATGAAGTGAAGGGTAATTTGGATAATAGCTCAGATGATTATATATGTTCAGTTTGCCATGACGGGGGAGAACTAGTGTTATGTGATCAATGTCCATCCTCGTTTCATATAAGTTGCCTCGGTTTAAAGGAGGTTCCAGCGGGCGATTGGTTCTGCCCTTCGTGCTGTTGTGGAATCTGTGGTCAAAGCGGATTCGATAAAGACACTGAGCAATTTAAAGATAATAGCGCAATAATCTGTGATCAGTGCGAGCATCAATATCATGTCGGGTGCATTAGAGGAAAGGATCTTGAGAAGCTAGACAGTTATCCTAAAGGAAATTGGTTTTGCAATGAAAGATGTGAACAGATATTTTTGGGTCTACACAGGCTTTTGGGAAAGCCATTTCCAGTGTCAGGACGATTAAATAACTTGACATGGACATTATTGAAGCACATGAACCCCGACAGTGGTGATCTTGATGCATCCAATGGTGATGACTTGACAGAAAACTACAGTAAGCTCAATGTTGCTCTTGGTGTGATGCACGAGTGTTTTGAGCCTGTTAAAGAACCGCGTACCCAGAGGGATCTTGTTGAAGATGTCTTTTTTAATAGATGGTCGGAGCTAAGGCGTTTGAACTTCCGAGGATTCTATACTGTGGTTTTGGAGAGAAATGAAGAACTCATTACGGTGGCTACTGTAAGGGTTTATGGAGAAAAGGTGGCTGAAGTTCCGCTTGTGGGTACAAGGTTTCAATTTCGTCGACTTGGAATGTGCCGGGTCCTGATGGATGAGCTTGAAAAGAAACTCATGGAGTTAGGAGTGGAGAGGCTAGTTTTGCCGGCTATTCCGAATGTGCTAGATACTTGGACCGGTCCGTTTGGGTTTTCTACAATGACAGAGTCCGATCGATTAAGCCTTTTAGACTACACCTTCCTTTATTTTCAGGACACCATCATGTGCCAGAAATTCTTATCGAAGATCCCCTCAGAATCTAACCCATGCCCATTGATAGCAACGGAGCAAAAATGCAGTGATATCAATGGAAATGACATGATGAATTTGGATGGGAATAGTGCGGAATCTGAAGTATTTCAAGCAGCCCAAATTGAGGAGAGTGCAAGTGTTGATCAAAGATCCATAGGCATTGCTAGAGACGGCACCAATAGCGGGAACAGCACAAACCCCCTTATTTCCAATACCGAGAACAGCGCAAACCCCCAGATGAATAAACCAACTGATGCCGAATGCCCGCCTCGCCAAGGTGAACTAATTCTTGCGTGTTCACTTAAAGATTCTCACTATGCCGAATGCGAGAAAGACGGTCATGGACTTTTCAAATGCTATAAGCGAAGAAAAGTATCTGCTTGCGGGAGCTAAGGGGCAGTGTAAGACTATCACAAATGATAAATTAAGCAAATTTTCCTAATAAGAAAAAAAGGAAAAAATTCAAGTGGATTGTGCTAACGAGCCATATGGGGTGTCTTTGGAGCCGGTTTCTTGGGACCCTTGAAGATAAATTTTGGCCATATGCACGGATTTTCCTCCATTGTTAAGGA

Network for GWHGAAZE000645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05641.13	Agenet	23	79	2.70E-12
PF16135.6	TDBD	641	692	2.20E-23
PF00628.30	PHD	721	763	2.20E-08

Protein Sequence

>GWHPAAZE000646
MRGKGSVTVGKPKRFERGVGVGEVRGIEEGFRGSWHSGTVIACQDRKRTVKYDHLLSEDGTGRLTDTLVVSPVIRPLPPPVDVNKQYLHYGQCVDVFHNEAWWEGVVIDHEVGASDRMIFFPDMGDEIKASIDILRITQDWDDVNEEWKPRGNWLFLEVIEETEKEWPVVVSVKQIWYEVRGKKGFEDLNEWTCSVRDVWKDLVLEVIVDYFKLTVTEIFRNLNPKGDSEERKEKIEPFLDCIEPAFYLSVSDLGFDNTCQLSHLPPNDPSQLVQESEFKEELASVMEGGSFMSLLTSSLNPPHVESQPPALSFFPCNASDTCQVSSKIFKQKLDKPAWHIAGPDLVPKAEYCPNAITDFNNKYTSGSKPSSAEMLNVRKHLSFLGWRIEHVRENKGKSKFRYFSPEAKPKCYYSLHLLCKDYNLLCKDFVESPSGIFSLTPQNDQNDQRSLALIEQPQVPEDLRDSSMGILSLVPQDGQESLANTPNSPFSEAFEDELTEPVYCPQAIVDYCLLGDSIRWIRKNDRKIKHLRVKVKKHLRSVGWSFFYTKKGSRRELRYKSPSGRVYISLITACQSYMAEDGKSDQKAHASTRRKRSSIRARQAVAPSHHMPRTILCWLIDNSVVLAGEKVYYHGKNAEGRVTREGIMCNCCQCTFTLTEFETHVGSKNHRPAANIYLDDGRSLLDCQQELKRVSNRGKHLSMEPHEVKGNLDNSSDDYICSVCHDGGELVLCDQCPSSFHISCLGLKEVPAGDWFCPSCCCGICGQSGFDKDTEQFKDNSAIICDQCEHQYHVGCIRGKDLEKLDSYPKGNWFCNERCEQIFLGLHRLLGKPFPVSGRLNNLTWTLLKHMNPDSGDLDASNGDDLTENYSKLNVALGVMHECFEPVKEPRTQRDLVEDVFFNRWSELRRLNFRGFYTVVLERNEELITVATVRVYGEKVAEVPLVGTRFQFRRLGMCRVLMDELEKKLMELGVERLVLPAIPNVLDTWTGPFGFSTMTESDRLSLLDYTFLYFQDTIMCQKFLSKIPSESNPCPLIATEQKCSDINGNDMMNLDGNSAESEVFQAAQIEESASVDQRSIGIARDGTNSGNSTNPLISNTENSANPQMNKPTDAECPPRQGELILACSLKDSHYAECEKDGHGLFKCYKRRKVSACGS

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008080	molecular_function	N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.982
	SRR3591706	second leaf	5.303
	SRR3591707	mature leaf	2.082
	SRR3591708	Shoot apex	11.889
	SRR3591709	Stem	3.964
	SRR3591710	White floral bud	1.612
	SRR3591711	White flower	2.513
	SRR3591712	Green floral bud	3.124
	SRR3591713	Yellow flower	0.748
SRP173429	SRR8316895	Juvenile bud stage	2.676
	SRR8316896	Juvenile bud stage	3.095
	SRR8316897	Juvenile bud stage	1.708
	SRR8316894	Third green stage	1.509
	SRR8316900	Third green stage	2.638
	SRR8316901	Third green stage	2.097
	SRR8316898	Complete white stage	0.486
	SRR8316899	Complete white stage	2.425
	SRR8316903	Complete white stage	1.058
	SRR8316902	Silver flowering stage	0.187
	SRR8316904	Silver flowering stage	0.465
	SRR8316905	Silver flowering stage	0.231
	SRR8316906	Gold flowering stage	0.520
	SRR8316907	Gold flowering stage	0.746
	SRR8316908	Gold flowering stage	0.405
SRP132670	SRR6706286	Control	1.693
	SRR6706287	Light intensity 50%	2.069
	SRR6706288	Light intensity 20%	2.119
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.341
	CNS0095593	Slightly white alabastrum(diploid) 2	1.641
	CNS0095594	Slightly white alabastrum(diploid) 3	1.262
	CNS0095595	Whole white alabastrum(diploid) 2	1.383
	CNS0095596	Whole white alabastrum(diploid) 3	0.855
	CNS0095597	Whole white alabastrum(diploid) 4	1.099
	CNS0095598	Silvery flower (diploied) 1	3.031
	CNS0095599	Silvery flower (diploied) 2	2.559
	CNS0095600	Silvery flower (diploied) 3	1.672
	CNS0095601	Golden flower (diploid) 1	2.347
	CNS0095602	Golden flower (diploid) 2	2.106
	CNS0095603	Golden flower (diploid) 3	2.147
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.280
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.263
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.585
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.764
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.613
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.731
	CNS0095610	Silvery flower (tetraploid) 1	1.249
	CNS0095611	Silvery flower (tetraploid) 2	1.919
	CNS0095612	Silvery flower (tetraploid) 3	0.940
	CNS0095613	Golden flower (tetraploid) 1	0.310
	CNS0095614	Golden flower (tetraploid) 2	1.281
	CNS0095615	Golden flower (tetraploid) 3	0.274
CRA001975	CRR073297	Stem 1	7.246
	CRR073298	Stem 2	5.509
	CRR073299	Stem 3	5.976
	CRR073300	Leaf 1	3.299
	CRR073301	Leaf 2	3.585
	CRR073302	Leaf 3	3.594
	CRR073303	Juvenile bud 1	1.538
	CRR073304	Juvenile bud 2	0.977
	CRR073305	Juvenile bud 3	2.650
	CRR073306	Third green 1	0.130
	CRR073307	Third green 2	0.045
	CRR073308	Third green 3	0.124
	CRR073309	Second white 1	0.065
	CRR073310	Second white 2	0.127
	CRR073311	Second white 3	0.086
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.789
	CRR073316	Gold flowering 2	1.834
	CRR073317	Gold flowering 3	1.605
	CRR073318	Tawny withering 1	3.042
	CRR073319	Tawny withering 2	2.421
	CRR073320	Tawny withering 3	1.695