Gene detail

Detail information of GWHGAAZE000649

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN60531.1	0	hypothetical protein VITISV_005582 [Vitis vinifera]
Swissprot	tr\|Q9SFX2\|PUB43_ARATH	7E-28	U-box domain-containing protein 43
trEMBL	tr\|A5ASE1\|A5ASE1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN60531.1}
TAIR10	AT1G76390.2	6E-21	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13269233	13272031	+
GWHAAZE00000001	mRNA	13269233	13272031	+
GWHAAZE00000001	exon	13269233	13269530	+
GWHAAZE00000001	exon	13270215	13270553	+
GWHAAZE00000001	exon	13271004	13271108	+
GWHAAZE00000001	exon	13271212	13271682	+
GWHAAZE00000001	exon	13271763	13272031	+
GWHAAZE00000001	CDS	13269233	13269530	+
GWHAAZE00000001	CDS	13270215	13270553	+
GWHAAZE00000001	CDS	13271004	13271108	+
GWHAAZE00000001	CDS	13271212	13271682	+
GWHAAZE00000001	CDS	13271763	13272031	+

Transcript Sequence
>GWHTAAZE000651 ATGCTTGAAGAGGGTGTAACTAGATTGGTTATACATGGTCTTATTGGGAGCTCAGAAAAGAGAGAATATGCTGTAAAGTTATTGCTTGAATTCTCAAGGGATGAAGCTTTTTGCATTACAATTGCTTCACAAAAAGGGGCATTAGTTCTCCTTTCAAGTATGGCAGGGAATTTGGAGCAACCTGCTTTATCTAATTTAGCAGAGGAGGTGTTGAAGCGAATGGAGAGGGTGGAGGACAATGTGCAGCATTTAGCAGCAGCAGGAAGATTTGAACCTTTACTTAGTCGGCTATGTGAAGGCCGATCACCGAGCCTACAAGCTTTATATAACCTATCATCCTTAGACGACAACGCAACAATCCTTGTTGATTCTGCTGCACTTCCGGCTCTTACTGATATTCTTTTTGAGAATCCCGAGGTATCATTGGAGTTGAAGGAATTGGCTGCATCAATAATTGCAAACATAGTATCGAATCCTGGACATTGGGAATTAGCATCAGCTAACAGTGAGAGGCATTCTTTGCAGTCAGAATCAGTTGTCTTTAGTCTTTTGGGGCTTCTCTCTGTTGGATCGCCTCAGTGTCAAGTATCTATTCTTCGGATTATGTATGGAATTGCGTCCTCTCCCCAGGCATCGGAATCAGTCATGGCTCACATAAAATCCGCCGATGGTCTAAAAACTATCATAGCATTTCTTGATCACGAGAACTGGAACACAGAATTCATGCTTTCAAGCTTACAAAATGGTGAAAGATCAGATGCCGCTTGTATACTTGCTAATCTTCCTCTCTCTCAAAACGAAGTAAAGACTGTAATGGAATCTAATTTTGTAAGATGGACCATTTCAACCCTTGGAGCTCAACACCATAGCTCCAACGGAAGAACAGCCAGACCCACATCAATCATGGTGGAAGGTCTTCTTGGCTTACTACTGCACTTGACCAGGAATCCCGATCAAGAATCCATTACCATCATCAAAGATTATGCGCTCATGGCCATTTTCCGCGAGCAGCTTGTGTTTACCTCGAAACCGAAGGAGAAACAGCTAGCTGTCGTTGGATTACGACACTTGTCGGAATCCAGGCCACTTGCTGCCGGGGACTCAGACCAACAGCCCCCTCATGGGTTCTGCTCATCGTTATTTGTGTGCGGGCGAGCAAGCCCCGACACGTCAGCGTGCCAGTTCATGATTCCCCGTGCAAAGATGACAGTCACGGTGGAGGCACTTTCGACTCTAGCCATTGATACTTCAAACAGTTTCAATCGAGCCATTGATGAGCTTGATCGAGTGGGTGTGGTGGAAGGGGTGATTATGTTGTTTACTCAAGCTCGGCCCGGTGAGCTTCAAGAGAAGGCGATTTGGATGGTGGAGAGGATGTTGAGAGCGGATAGCCTCGTACTGCGGCACTCGCTGAATCAGCCCTTCTTCGGCTTTGGTGGCGATTTAAGCACGGAGATAGCATCACAAAGCGACATCGCATAA

Network for GWHGAAZE000649

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0171

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.389
	SRR3591706	second leaf	3.116
	SRR3591707	mature leaf	5.031
	SRR3591708	Shoot apex	8.580
	SRR3591709	Stem	5.912
	SRR3591710	White floral bud	2.585
	SRR3591711	White flower	5.556
	SRR3591712	Green floral bud	3.053
	SRR3591713	Yellow flower	3.932
SRP173429	SRR8316895	Juvenile bud stage	9.419
	SRR8316896	Juvenile bud stage	7.713
	SRR8316897	Juvenile bud stage	16.052
	SRR8316894	Third green stage	1.084
	SRR8316900	Third green stage	1.968
	SRR8316901	Third green stage	3.444
	SRR8316898	Complete white stage	1.128
	SRR8316899	Complete white stage	7.224
	SRR8316903	Complete white stage	2.888
	SRR8316902	Silver flowering stage	1.869
	SRR8316904	Silver flowering stage	2.421
	SRR8316905	Silver flowering stage	1.399
	SRR8316906	Gold flowering stage	4.045
	SRR8316907	Gold flowering stage	3.630
	SRR8316908	Gold flowering stage	5.192
SRP132670	SRR6706286	Control	2.463
	SRR6706287	Light intensity 50%	2.519
	SRR6706288	Light intensity 20%	2.393
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.318
	CNS0095593	Slightly white alabastrum(diploid) 2	2.526
	CNS0095594	Slightly white alabastrum(diploid) 3	3.834
	CNS0095595	Whole white alabastrum(diploid) 2	3.265
	CNS0095596	Whole white alabastrum(diploid) 3	1.638
	CNS0095597	Whole white alabastrum(diploid) 4	1.494
	CNS0095598	Silvery flower (diploied) 1	3.248
	CNS0095599	Silvery flower (diploied) 2	6.902
	CNS0095600	Silvery flower (diploied) 3	9.654
	CNS0095601	Golden flower (diploid) 1	12.214
	CNS0095602	Golden flower (diploid) 2	13.759
	CNS0095603	Golden flower (diploid) 3	13.067
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.472
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.159
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.637
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.855
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.914
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.252
	CNS0095610	Silvery flower (tetraploid) 1	4.947
	CNS0095611	Silvery flower (tetraploid) 2	5.380
	CNS0095612	Silvery flower (tetraploid) 3	4.884
	CNS0095613	Golden flower (tetraploid) 1	2.944
	CNS0095614	Golden flower (tetraploid) 2	5.102
	CNS0095615	Golden flower (tetraploid) 3	3.397
CRA001975	CRR073297	Stem 1	3.836
	CRR073298	Stem 2	3.001
	CRR073299	Stem 3	2.087
	CRR073300	Leaf 1	2.392
	CRR073301	Leaf 2	2.318
	CRR073302	Leaf 3	2.290
	CRR073303	Juvenile bud 1	1.948
	CRR073304	Juvenile bud 2	2.135
	CRR073305	Juvenile bud 3	2.958
	CRR073306	Third green 1	1.680
	CRR073307	Third green 2	2.534
	CRR073308	Third green 3	1.740
	CRR073309	Second white 1	1.293
	CRR073310	Second white 2	1.313
	CRR073311	Second white 3	0.794
	CRR073312	Silver flowering 1	0.743
	CRR073313	Silver flowering 2	1.275
	CRR073314	Silver flowering 3	0.820
	CRR073315	Gold flowering 1	4.044
	CRR073316	Gold flowering 2	8.631
	CRR073317	Gold flowering 3	5.240
	CRR073318	Tawny withering 1	5.235
	CRR073319	Tawny withering 2	5.188
	CRR073320	Tawny withering 3	5.630