Detail information of GWHGAAZE000658


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004246957.12.1362E-81PREDICTED: uncharacterized protein LOC101264968 isoform X1 [Solanum lycopersicum]
Swissprottr|F4KBP5|CHR4_ARATH0.00000005Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|K4CSL5|K4CSL5_SOLLC8E-82Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g031580.2.1}
TAIR10AT5G58610.16E-61PHD finger transcription factor, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1341646913421817-
GWHAAZE00000001mRNA1341646913421817-
GWHAAZE00000001exon1341646913416803-
GWHAAZE00000001exon1341690213416980-
GWHAAZE00000001exon1341772713417780-
GWHAAZE00000001exon1341788013417952-
GWHAAZE00000001exon1341806313418129-
GWHAAZE00000001exon1341936213419461-
GWHAAZE00000001exon1341954813419622-
GWHAAZE00000001exon1342011013420275-
GWHAAZE00000001exon1342112413421253-
GWHAAZE00000001exon1342168013421817-
GWHAAZE00000001CDS1342168013421817-
GWHAAZE00000001CDS1342112413421253-
GWHAAZE00000001CDS1342011013420275-
GWHAAZE00000001CDS1341954813419622-
GWHAAZE00000001CDS1341936213419461-
GWHAAZE00000001CDS1341806313418129-
GWHAAZE00000001CDS1341788013417952-
GWHAAZE00000001CDS1341772713417780-
GWHAAZE00000001CDS1341690213416980-
GWHAAZE00000001CDS1341668113416803-
GWHAAZE00000001three_prime_UTR1341646913416680-
Transcript Sequence

Network for GWHGAAZE000658

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD18598.30E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.347
SRR3591706second leaf1.561
SRR3591707mature leaf1.117
SRR3591708Shoot apex5.888
SRR3591709Stem1.443
SRR3591710White floral bud1.107
SRR3591711White flower0.839
SRR3591712Green floral bud1.433
SRR3591713Yellow flower0.466
SRP173429 SRR8316895Juvenile bud stage 1.159
SRR8316896Juvenile bud stage 0.998
SRR8316897Juvenile bud stage 0.265
SRR8316894Third green stage 0.364
SRR8316900Third green stage 1.275
SRR8316901Third green stage 0.683
SRR8316898Complete white stage 0.121
SRR8316899Complete white stage 1.184
SRR8316903Complete white stage 0.320
SRR8316902Silver flowering stage0.149
SRR8316904Silver flowering stage0.156
SRR8316905Silver flowering stage0.014
SRR8316906Gold flowering stage 0.324
SRR8316907Gold flowering stage 0.082
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.443
SRR6706287Light intensity 50%0.690
SRR6706288Light intensity 20%0.664
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.387
CNS0095593Slightly white alabastrum(diploid) 21.245
CNS0095594Slightly white alabastrum(diploid) 30.737
CNS0095595Whole white alabastrum(diploid) 21.388
CNS0095596Whole white alabastrum(diploid) 30.594
CNS0095597Whole white alabastrum(diploid) 41.141
CNS0095598Silvery flower (diploied) 11.682
CNS0095599Silvery flower (diploied) 21.897
CNS0095600Silvery flower (diploied) 30.982
CNS0095601Golden flower (diploid) 11.064
CNS0095602Golden flower (diploid) 20.263
CNS0095603Golden flower (diploid) 30.714
CNS0095604Slightly white alabastrum(tetraploid) 10.071
CNS0095605Slightly white alabastrum(tetraploid) 20.083
CNS0095606Slightly white alabastrum(tetraploid) 30.960
CNS0095607Whole white alabastrum(tetraploid) 10.028
CNS0095608Whole white alabastrum(tetraploid) 20.189
CNS0095609Whole white alabastrum(tetraploid) 30.272
CNS0095610Silvery flower (tetraploid) 10.048
CNS0095611Silvery flower (tetraploid) 20.168
CNS0095612Silvery flower (tetraploid) 30.010
CNS0095613Golden flower (tetraploid) 10.015
CNS0095614Golden flower (tetraploid) 20.282
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 12.472
CRR073298Stem 22.802
CRR073299Stem 31.879
CRR073300Leaf 11.155
CRR073301Leaf 21.479
CRR073302Leaf 31.134
CRR073303Juvenile bud 10.673
CRR073304Juvenile bud 20.395
CRR073305Juvenile bud 31.066
CRR073306Third green 10.006
CRR073307Third green 20.017
CRR073308Third green 30.083
CRR073309Second white 10.000
CRR073310Second white 20.026
CRR073311Second white 30.003
CRR073312Silver flowering 10.119
CRR073313Silver flowering 20.007
CRR073314Silver flowering 30.017
CRR073315Gold flowering 10.541
CRR073316Gold flowering 20.652
CRR073317Gold flowering 30.487
CRR073318Tawny withering 11.029
CRR073319Tawny withering 20.686
CRR073320Tawny withering 30.859