Gene detail

Detail information of GWHGAAZE000664

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278953.1	3.1737E-141	PREDICTED: U-box domain-containing protein 44-like [Vitis vinifera]
Swissprot	tr\|Q9SFX2\|PUB43_ARATH	5E-26	U-box domain-containing protein 43
trEMBL	tr\|D7SJW4\|D7SJW4_VITVI	2E-141	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15940.3}
TAIR10	AT1G76390.2	1E-21	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13531821	13533892	+
GWHAAZE00000001	mRNA	13531821	13533892	+
GWHAAZE00000001	exon	13531821	13532127	+
GWHAAZE00000001	exon	13532690	13532784	+
GWHAAZE00000001	exon	13532933	13533152	+
GWHAAZE00000001	exon	13533603	13533892	+
GWHAAZE00000001	CDS	13531821	13532127	+
GWHAAZE00000001	CDS	13532690	13532784	+
GWHAAZE00000001	CDS	13532933	13533152	+
GWHAAZE00000001	CDS	13533603	13533892	+

Transcript Sequence
>GWHTAAZE000666 GAAATAATGCTTGAAGAGGGTGTAACTAGATTGGTTATACATGGTCTTATTGGGAGCTCAGAAAAAGAGAGAGAATATGCTGTAAAGTTATTGCTTGAATTCTCAAGGGATGAAGCTTTTTGCATTACAATTGCTTCACAAAAAGGGGCATTAGTTCTCCTTTCAAGTATGGCAGGGAATTTGGAGCAACCTGCTTTATCTAATTTAGCAGAGGAGGTGTTGAAGCGAATGGAGAGGGTGGAGGACAATGTGCAGCATTTAGCAGCAGCAGGAAGATTTGAACCTTTACTTAGTCGGCTATGTGAAGGTTCTGATAATGTTAAAATAGAGACGGCATATATGTTGGGAAGGATGACCTTAACAAATAGCAACAAAGAACAAATTGCTCTGAGAAGTGCTAAAGTATCATTGGAGTTGAAGGAATTGGCTGCATCAATAATTGCAAACATAGTATCGAATCCTGGACATTGGGAATTAGCATCAGCTAACAGTGAGAGGCATTCTTTGCAGTCAGAATCAGTTGTCTTTAGTCTTTTGGGGCTTCTCTCTGTTGGATCGCCTCAGTGTCAAGTATCTATTCTTCGGATTATGTATGGAATTGCGTCCTCTCCCCAGGCATCGGAATCAGTCATGGCTCACATAAAATCCGCCGATGGTCTAAAAACTATCATAGCATTTCTTGATCACCGAGAACTGGAACACAGAATTCATGCTTTCAAGCTTACAAAAGTCCTCTCCCAAAGACTCTGTGAGGATCTTGGCAATGAACTAAAAAAAAACCATACCAAGCTTCCCTTTATTAAAGAAAAAATATTGGACAACCAATCTACAGATGGTGAAAGATCAGATGCCGCTTGTATACTTGCTAATCTTCCTCTCTCAAAACGAAGTAAAGACTGTAATGGAATCTAA

Network for GWHGAAZE000664

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0171

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.458
	SRR3591706	second leaf	3.433
	SRR3591707	mature leaf	10.878
	SRR3591708	Shoot apex	14.523
	SRR3591709	Stem	10.401
	SRR3591710	White floral bud	3.976
	SRR3591711	White flower	8.241
	SRR3591712	Green floral bud	5.109
	SRR3591713	Yellow flower	5.134
SRP173429	SRR8316895	Juvenile bud stage	16.758
	SRR8316896	Juvenile bud stage	13.309
	SRR8316897	Juvenile bud stage	23.804
	SRR8316894	Third green stage	2.205
	SRR8316900	Third green stage	4.429
	SRR8316901	Third green stage	6.869
	SRR8316898	Complete white stage	1.612
	SRR8316899	Complete white stage	12.790
	SRR8316903	Complete white stage	5.364
	SRR8316902	Silver flowering stage	3.292
	SRR8316904	Silver flowering stage	3.947
	SRR8316905	Silver flowering stage	2.270
	SRR8316906	Gold flowering stage	7.278
	SRR8316907	Gold flowering stage	5.056
	SRR8316908	Gold flowering stage	8.856
SRP132670	SRR6706286	Control	4.466
	SRR6706287	Light intensity 50%	5.119
	SRR6706288	Light intensity 20%	4.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.561
	CNS0095593	Slightly white alabastrum(diploid) 2	3.078
	CNS0095594	Slightly white alabastrum(diploid) 3	4.399
	CNS0095595	Whole white alabastrum(diploid) 2	4.169
	CNS0095596	Whole white alabastrum(diploid) 3	2.482
	CNS0095597	Whole white alabastrum(diploid) 4	2.548
	CNS0095598	Silvery flower (diploied) 1	7.605
	CNS0095599	Silvery flower (diploied) 2	11.406
	CNS0095600	Silvery flower (diploied) 3	16.903
	CNS0095601	Golden flower (diploid) 1	18.460
	CNS0095602	Golden flower (diploid) 2	22.550
	CNS0095603	Golden flower (diploid) 3	24.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.971
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.159
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.217
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.329
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.749
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.804
	CNS0095610	Silvery flower (tetraploid) 1	9.009
	CNS0095611	Silvery flower (tetraploid) 2	10.535
	CNS0095612	Silvery flower (tetraploid) 3	8.709
	CNS0095613	Golden flower (tetraploid) 1	4.769
	CNS0095614	Golden flower (tetraploid) 2	8.492
	CNS0095615	Golden flower (tetraploid) 3	6.321
CRA001975	CRR073297	Stem 1	5.219
	CRR073298	Stem 2	4.748
	CRR073299	Stem 3	3.287
	CRR073300	Leaf 1	3.644
	CRR073301	Leaf 2	2.246
	CRR073302	Leaf 3	2.507
	CRR073303	Juvenile bud 1	3.769
	CRR073304	Juvenile bud 2	2.052
	CRR073305	Juvenile bud 3	3.549
	CRR073306	Third green 1	1.021
	CRR073307	Third green 2	1.316
	CRR073308	Third green 3	2.304
	CRR073309	Second white 1	1.110
	CRR073310	Second white 2	1.310
	CRR073311	Second white 3	0.941
	CRR073312	Silver flowering 1	1.741
	CRR073313	Silver flowering 2	0.893
	CRR073314	Silver flowering 3	1.105
	CRR073315	Gold flowering 1	5.620
	CRR073316	Gold flowering 2	12.693
	CRR073317	Gold flowering 3	6.998
	CRR073318	Tawny withering 1	6.012
	CRR073319	Tawny withering 2	7.338
	CRR073320	Tawny withering 3	6.227