Gene detail

Detail information of GWHGAAZE000672

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010104626.1	0	putative pyridoxal biosynthesis protein PDX1 [Morus notabilis]
Swissprot	tr\|Q39963\|PDX1_HEVBR	0	Probable pyridoxal biosynthesis protein PDX1
trEMBL	tr\|W9RXB1\|W9RXB1_9ROSA	0	Putative pyridoxal biosynthesis protein PDX1 {ECO:0000313\|EMBL:EXC01432.1}
TAIR10	AT5G01410.1	2E-149	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13693216	13694648	-
GWHAAZE00000001	mRNA	13693216	13694648	-
GWHAAZE00000001	exon	13693216	13693512	-
GWHAAZE00000001	exon	13694010	13694648	-
GWHAAZE00000001	CDS	13694010	13694648	-
GWHAAZE00000001	CDS	13693216	13693512	-

Transcript Sequence
>GWHTAAZE000674 ATGGCTGGAAGCGGAGTCGTAACAGTCTACGGCAACGGCGCAATAACCGAAACCACCAAAACCTCCTCCCCTTTCTCCGTCAAGGTCGGCCTCGCCCAGATGCTACGTGGCGGCGTAATAATGGACGTCATTAACGCTGACCAAGCCCGCATCGCCGAAGAAGCAGGTGCCTGCGCCGTCATGGCCCTCGAGCGAGTACCCGCCGACATACGAGCTCAGGGAGGGGTTGCTCGAATGAGCGACCCCCAGCTCATAAAAGAAATCAAACAGGCCGTAACAATCCCCGTGATGGCCAAGGCTAGAATTGGTCATTTTGTGGAAGCCCAGATATTAGAAGCCTTAGGAGTTGATTATATTGATGAGAGCGAGGTATTGACGGTTGCGGATGAGGAGAATCATATTAACAAGCATAATTTTAGGGTTCCGTTCGTTTGCGGGTGCCGGAATTTGGGGGAGGCGCTTAGGAGGATAAGGGAGGGAGCGGCGATGATAAGGACGAAAGGAGAGGCGGGGACGGGAAATGTGATTGAGGCGGTGAGGCATGTGAGGTCGGTGATGGGAGAGATTAGGGTTTTGAGGAATATGGACGATGATGAAGTTTTTACTTTCGCCAAGAAGATCGCGGCTCCTTACGATCTGGTGATGCAGGCGAAGCAGCTCGGGAGGTTGCCAGTAGTACAATTCGCCGCTGGTGGTATTGCTACTCCGGCTGATGCAGCACTGATGATGCAATTGGGATGCGATGGGGTATTTGTGGGGTCCGGCGTGTTCAAGAGCGGTGATCCGGCGAGGAGGGCTAGGGCTATTGTTCAGGCAGTAACTCATTATAGTGACCCTGATATTTTGGCGGATGTGAGCTGTGGATTGGGCGAGGCAATGGTGGGGATTAATCTGAACGATGATAATGTTGAGAGGTATGCGAGTCGATCAGAGTAG

Network for GWHGAAZE000672

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01680.18	SOR_SNZ	25	230	1.10E-112

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06215	pdxS, pdx1	Vitamin B6 metabolism	map00750

Gene Ontology

GO term	Ontology	Name
GO:0042819	biological_process	vitamin B6 biosynthetic process
GO:0042823	biological_process	pyridoxal phosphate biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.345
	SRR3591706	second leaf	38.829
	SRR3591707	mature leaf	46.578
	SRR3591708	Shoot apex	42.126
	SRR3591709	Stem	34.035
	SRR3591710	White floral bud	48.876
	SRR3591711	White flower	68.719
	SRR3591712	Green floral bud	44.204
	SRR3591713	Yellow flower	53.308
SRP173429	SRR8316895	Juvenile bud stage	27.128
	SRR8316896	Juvenile bud stage	42.734
	SRR8316897	Juvenile bud stage	20.056
	SRR8316894	Third green stage	14.668
	SRR8316900	Third green stage	43.658
	SRR8316901	Third green stage	46.370
	SRR8316898	Complete white stage	11.792
	SRR8316899	Complete white stage	41.759
	SRR8316903	Complete white stage	28.053
	SRR8316902	Silver flowering stage	15.861
	SRR8316904	Silver flowering stage	16.596
	SRR8316905	Silver flowering stage	12.461
	SRR8316906	Gold flowering stage	33.052
	SRR8316907	Gold flowering stage	35.574
	SRR8316908	Gold flowering stage	37.270
SRP132670	SRR6706286	Control	50.675
	SRR6706287	Light intensity 50%	50.064
	SRR6706288	Light intensity 20%	49.727
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.176
	CNS0095593	Slightly white alabastrum(diploid) 2	43.665
	CNS0095594	Slightly white alabastrum(diploid) 3	53.733
	CNS0095595	Whole white alabastrum(diploid) 2	41.255
	CNS0095596	Whole white alabastrum(diploid) 3	39.529
	CNS0095597	Whole white alabastrum(diploid) 4	39.154
	CNS0095598	Silvery flower (diploied) 1	36.932
	CNS0095599	Silvery flower (diploied) 2	30.612
	CNS0095600	Silvery flower (diploied) 3	39.601
	CNS0095601	Golden flower (diploid) 1	28.315
	CNS0095602	Golden flower (diploid) 2	42.421
	CNS0095603	Golden flower (diploid) 3	38.680
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.398
	CNS0095605	Slightly white alabastrum(tetraploid) 2	57.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.897
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.603
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.932
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.589
	CNS0095610	Silvery flower (tetraploid) 1	53.611
	CNS0095611	Silvery flower (tetraploid) 2	40.196
	CNS0095612	Silvery flower (tetraploid) 3	42.384
	CNS0095613	Golden flower (tetraploid) 1	44.215
	CNS0095614	Golden flower (tetraploid) 2	54.177
	CNS0095615	Golden flower (tetraploid) 3	42.504
CRA001975	CRR073297	Stem 1	38.156
	CRR073298	Stem 2	39.694
	CRR073299	Stem 3	40.754
	CRR073300	Leaf 1	36.561
	CRR073301	Leaf 2	32.837
	CRR073302	Leaf 3	31.815
	CRR073303	Juvenile bud 1	33.569
	CRR073304	Juvenile bud 2	35.200
	CRR073305	Juvenile bud 3	33.020
	CRR073306	Third green 1	21.144
	CRR073307	Third green 2	21.771
	CRR073308	Third green 3	18.495
	CRR073309	Second white 1	25.185
	CRR073310	Second white 2	22.661
	CRR073311	Second white 3	16.855
	CRR073312	Silver flowering 1	27.368
	CRR073313	Silver flowering 2	28.643
	CRR073314	Silver flowering 3	38.693
	CRR073315	Gold flowering 1	48.561
	CRR073316	Gold flowering 2	59.222
	CRR073317	Gold flowering 3	56.385
	CRR073318	Tawny withering 1	30.821
	CRR073319	Tawny withering 2	25.137
	CRR073320	Tawny withering 3	26.337