Gene detail

Detail information of GWHGAAZE000677

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002323578.2	0	Ca2+/H+ exchanger family protein [Populus trichocarpa]
Swissprot	tr\|Q39253\|CAX1_ARATH	0	Vacuolar cation/proton exchanger 1
trEMBL	tr\|B9IG90\|B9IG90_POPTR	0	Ca2+/H+ exchanger family protein {ECO:0000313\|EMBL:EEF05339.2}
TAIR10	AT3G51860.1	4E-135	cation exchanger 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13783357	13787627	+
GWHAAZE00000001	mRNA	13783357	13787627	+
GWHAAZE00000001	exon	13783357	13783623	+
GWHAAZE00000001	exon	13783761	13783828	+
GWHAAZE00000001	exon	13784178	13784206	+
GWHAAZE00000001	exon	13784352	13784548	+
GWHAAZE00000001	exon	13784856	13785068	+
GWHAAZE00000001	exon	13785447	13785575	+
GWHAAZE00000001	exon	13785676	13785792	+
GWHAAZE00000001	exon	13786520	13786573	+
GWHAAZE00000001	exon	13786665	13786781	+
GWHAAZE00000001	exon	13787185	13787278	+
GWHAAZE00000001	exon	13787581	13787627	+
GWHAAZE00000001	CDS	13783357	13783623	+
GWHAAZE00000001	CDS	13783761	13783828	+
GWHAAZE00000001	CDS	13784178	13784206	+
GWHAAZE00000001	CDS	13784352	13784548	+
GWHAAZE00000001	CDS	13784856	13785068	+
GWHAAZE00000001	CDS	13785447	13785575	+
GWHAAZE00000001	CDS	13785676	13785792	+
GWHAAZE00000001	CDS	13786520	13786573	+
GWHAAZE00000001	CDS	13786665	13786781	+
GWHAAZE00000001	CDS	13787185	13787278	+
GWHAAZE00000001	CDS	13787581	13787627	+

Transcript Sequence
>GWHTAAZE000679 ATGGGTTCATTGGACAACTTGAACTTGGAAAATGGAGATTTGAAGGAAATTATAAGCAAGGAGAACAATATCCCCCGGACCGCGAATAATTTGTCTGCTTCGTTGATGCGCAAAAAATCTGATCCGATGTTGGTATCAAAGGTTCGATTTCGAAGGGTGAGAGAGTTTCTTATTAATCTTCAAGAGGTGATTTTTGGGACCAAGCTTTGCGTGCTCTTTCCAGCCATCCCTTTGGCCATTGCTGCTGATTGTTACAGTTTTGGAAGACCATGGATTTTTGCACTGAGCTTACTAGGTCTTGCCCCGCTTGCTGAACGCGTCAGCTTTTTAACTGAACAACTATCATTCTACACTGGTCCAACAGTTGGAGGGCTGATTAATGCAACATGTGGTAATGCAACAGAGCTGATAATAGCATTATTTGCTCTTCACCAAAACAAATTAAATGTGGTGAAGTCATCTCTTTTGGGCTCCATTCTTTCGAACCTCCTCCTTGTTCTTGGCACCTCTCTCTTCTGTGGAGGACTGGCCAATCTCAAAAAGGAACAAATATTTGACAGAAGGCAAGCTGATGTGAACTCACTGCTGCTTTTATTGGGATTGCTTTGCCACGTGTTGCCATTGATGTTTAGATATGCCACTGGACCTGTTGAATTTTCATCTGGTTCAATTCTTCAATTGTCAAGAGCAAGCAGTATTGTTATGCTTTTAGCATATTTTGCATACCTCTTATTTCAATTAAAAACTCATGGTCACTTGTTCGAAGCACAAGAGGAATGTGAAGGTGATGATGATCTTTCTGAAGAGAAGCCTATTATAGGATTTTGGAGTGCATTTATTTGGTTGGTTGGTATGACACTAATAATAGCTTTACTATCCGAATATATTGTGGGCACTATTGAGGCTGCATCAGAGTCTTGGGGAATTTCTGTGAGTTTTATTAGCATAATTTTGCTACCAATTGTTGGGAATGCAGCTGAACATGCTGGATCAATCATATTTGCTTTGAGGAATAAACTGGATATATCTTTAGGTGTTGCTTTGGGTTCTGCATCTCAAATTTCAATGTTCGTGGTTCCATTAAGTGTGATTGTTGGGTGGATAATGGGTGTCCCAATGGATTTGGATTTTAACCTCCTTGAAACTGGTTCTGTTGCTTTATCAATTCTCATCACAGCTTTCACCTTGCAGGATGGTACTTCTCACTACATGAAAGGAGTGGTTCTTTCTCTGTCCTACGTTGTAATTTCAGCATGCTTTTTTGTTGACAAACTTCCCCTCATCAATCAAACATCTGCCTTCAACTTGGGAGTCCATTCATCCTCTGCTTAG

Network for GWHGAAZE000677

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0278

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01699.25	Na_Ca_ex	91	247	8.70E-22
PF01699.25	Na_Ca_ex	278	417	1.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006816	biological_process	calcium ion transport
GO:0055085	biological_process	transmembrane transport
GO:0006812	biological_process	cation transport
GO:0016021	cellular_component	integral component of membrane
GO:0015369	molecular_function	calcium:proton antiporter activity
GO:0008324	molecular_function	cation transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.193
	SRR3591706	second leaf	46.632
	SRR3591707	mature leaf	18.842
	SRR3591708	Shoot apex	15.266
	SRR3591709	Stem	33.500
	SRR3591710	White floral bud	13.953
	SRR3591711	White flower	19.931
	SRR3591712	Green floral bud	2.712
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.470
	SRR8316896	Juvenile bud stage	0.127
	SRR8316897	Juvenile bud stage	0.205
	SRR8316894	Third green stage	2.141
	SRR8316900	Third green stage	0.405
	SRR8316901	Third green stage	0.119
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.996
	SRR8316903	Complete white stage	3.807
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.009
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.106
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.602
	SRR6706287	Light intensity 50%	1.986
	SRR6706288	Light intensity 20%	1.823
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.249
	CNS0095593	Slightly white alabastrum(diploid) 2	1.212
	CNS0095594	Slightly white alabastrum(diploid) 3	2.183
	CNS0095595	Whole white alabastrum(diploid) 2	2.243
	CNS0095596	Whole white alabastrum(diploid) 3	0.115
	CNS0095597	Whole white alabastrum(diploid) 4	1.748
	CNS0095598	Silvery flower (diploied) 1	38.008
	CNS0095599	Silvery flower (diploied) 2	13.921
	CNS0095600	Silvery flower (diploied) 3	6.561
	CNS0095601	Golden flower (diploid) 1	5.111
	CNS0095602	Golden flower (diploid) 2	10.074
	CNS0095603	Golden flower (diploid) 3	8.048
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.121
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.875
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.056
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.965
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.290
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.289
	CNS0095610	Silvery flower (tetraploid) 1	0.067
	CNS0095611	Silvery flower (tetraploid) 2	10.685
	CNS0095612	Silvery flower (tetraploid) 3	1.558
	CNS0095613	Golden flower (tetraploid) 1	0.065
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.187
CRA001975	CRR073297	Stem 1	1.633
	CRR073298	Stem 2	0.635
	CRR073299	Stem 3	1.090
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.132
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.012
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.114
	CRR073307	Third green 2	0.051
	CRR073308	Third green 3	0.040
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.012
	CRR073312	Silver flowering 1	0.071
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.348
	CRR073315	Gold flowering 1	8.666
	CRR073316	Gold flowering 2	16.459
	CRR073317	Gold flowering 3	14.892
	CRR073318	Tawny withering 1	0.177
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.643