Detail information of GWHGAAZE000684


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007016117.11.6444E-142RING/U-box superfamily protein isoform 2 [Theobroma cacao]
trEMBLtr|A0A061GW91|A0A061GW91_THECC6E-143RING/U-box superfamily protein isoform 2 {ECO:0000313|EMBL:EOY33736.1}
TAIR10AT3G47160.17E-102RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1387366313877040+
GWHAAZE00000001mRNA1387366313877040+
GWHAAZE00000001exon1387366313873898+
GWHAAZE00000001exon1387486913875019+
GWHAAZE00000001exon1387517713875243+
GWHAAZE00000001exon1387586413876098+
GWHAAZE00000001exon1387683013877040+
GWHAAZE00000001five_prime_UTR1387366313873833+
GWHAAZE00000001CDS1387383413873898+
GWHAAZE00000001CDS1387486913875019+
GWHAAZE00000001CDS1387517713875243+
GWHAAZE00000001CDS1387586413876098+
GWHAAZE00000001CDS1387683013877040+
Transcript Sequence

Network for GWHGAAZE000684

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_31431871.10E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.660
SRR3591706second leaf3.295
SRR3591707mature leaf3.274
SRR3591708Shoot apex10.798
SRR3591709Stem19.795
SRR3591710White floral bud13.582
SRR3591711White flower13.667
SRR3591712Green floral bud10.264
SRR3591713Yellow flower18.000
SRP173429 SRR8316895Juvenile bud stage 5.310
SRR8316896Juvenile bud stage 6.747
SRR8316897Juvenile bud stage 4.133
SRR8316894Third green stage 3.180
SRR8316900Third green stage 8.557
SRR8316901Third green stage 7.127
SRR8316898Complete white stage 13.088
SRR8316899Complete white stage 13.750
SRR8316903Complete white stage 14.572
SRR8316902Silver flowering stage9.805
SRR8316904Silver flowering stage14.624
SRR8316905Silver flowering stage8.285
SRR8316906Gold flowering stage 24.358
SRR8316907Gold flowering stage 27.473
SRR8316908Gold flowering stage 26.845
SRP132670SRR6706286Control1.603
SRR6706287Light intensity 50%2.058
SRR6706288Light intensity 20%2.597
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.010
CNS0095593Slightly white alabastrum(diploid) 26.509
CNS0095594Slightly white alabastrum(diploid) 311.161
CNS0095595Whole white alabastrum(diploid) 29.954
CNS0095596Whole white alabastrum(diploid) 39.049
CNS0095597Whole white alabastrum(diploid) 48.353
CNS0095598Silvery flower (diploied) 18.831
CNS0095599Silvery flower (diploied) 28.177
CNS0095600Silvery flower (diploied) 315.426
CNS0095601Golden flower (diploid) 111.199
CNS0095602Golden flower (diploid) 216.604
CNS0095603Golden flower (diploid) 316.802
CNS0095604Slightly white alabastrum(tetraploid) 110.119
CNS0095605Slightly white alabastrum(tetraploid) 28.524
CNS0095606Slightly white alabastrum(tetraploid) 34.980
CNS0095607Whole white alabastrum(tetraploid) 18.695
CNS0095608Whole white alabastrum(tetraploid) 29.491
CNS0095609Whole white alabastrum(tetraploid) 36.810
CNS0095610Silvery flower (tetraploid) 116.709
CNS0095611Silvery flower (tetraploid) 220.234
CNS0095612Silvery flower (tetraploid) 314.455
CNS0095613Golden flower (tetraploid) 114.460
CNS0095614Golden flower (tetraploid) 216.649
CNS0095615Golden flower (tetraploid) 337.106
CRA001975CRR073297Stem 17.895
CRR073298Stem 27.303
CRR073299Stem 36.341
CRR073300Leaf 19.965
CRR073301Leaf 27.524
CRR073302Leaf 37.472
CRR073303Juvenile bud 19.613
CRR073304Juvenile bud 25.774
CRR073305Juvenile bud 38.762
CRR073306Third green 12.819
CRR073307Third green 21.689
CRR073308Third green 32.453
CRR073309Second white 15.445
CRR073310Second white 22.686
CRR073311Second white 31.517
CRR073312Silver flowering 10.905
CRR073313Silver flowering 21.260
CRR073314Silver flowering 31.786
CRR073315Gold flowering 14.624
CRR073316Gold flowering 23.427
CRR073317Gold flowering 34.701
CRR073318Tawny withering 133.470
CRR073319Tawny withering 210.788
CRR073320Tawny withering 332.770