Gene detail

Detail information of GWHGAAZE000688

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG25462.1	4.3636E-158	60S acidic ribosomal P0 [Gossypium arboreum]
Swissprot	tr\|O04204\|RLA01_ARATH	1E-152	60S acidic ribosomal protein P0-1
trEMBL	tr\|A0A061FME5\|A0A061FME5_THECC	1E-157	Ribosomal protein L10 family protein isoform 2 {ECO:0000313\|EMBL:EOY17862.1}
TAIR10	AT2G40010.1	1E-116	Ribosomal protein L10 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13976727	13978983	+
GWHAAZE00000001	mRNA	13976727	13978983	+
GWHAAZE00000001	exon	13976727	13976946	+
GWHAAZE00000001	exon	13977105	13977139	+
GWHAAZE00000001	exon	13977644	13977712	+
GWHAAZE00000001	exon	13978393	13978491	+
GWHAAZE00000001	exon	13978570	13978983	+
GWHAAZE00000001	CDS	13976727	13976946	+
GWHAAZE00000001	CDS	13977105	13977139	+
GWHAAZE00000001	CDS	13977644	13977712	+
GWHAAZE00000001	CDS	13978393	13978491	+
GWHAAZE00000001	CDS	13978570	13978983	+

Transcript Sequence
>GWHTAAZE000690 ATGGCGGTGAAACCATCAAGAACAGAAAAGAAGAGTTCCTACGATAAGAAGCTGTGTCATCTTCTCGACATTTACTCCCAAATACTAGTCGTCGGTGCAGATAATGTCGGTTCGAACCAACTCCAGAACATTCGCAAAGGATTGAGAGGAGATTCGATCGTTTTAATGGGAAAAAACACTATGATGAAGCGATCTATTAGGATTCATGCTGAGAAGACTGATAGCTATTTCCGAATTTCAACTAATTTTGCAAATGGAAATGTTGGGCTGATTTTTACTAAGGGTGATCTGAAGGAAGTAAGTGATGAGGTTGCGAAATATAAGGTTGGAGCACCTGCTCGTGTTGGCCTTGTTGCTCCCATTGATGTTGTTGTTCCCCCTGGGAACACAGGACTTGATCCTTCTCAGACTTCCTTCTTTCAGGTTCTTAATATCCCAACCAAGATTAACAAAGGTACTGTGGAGATTGTCACCGCGGTTGAGCTTATTAAGAAAGGTGACAAGGTGGGCTCATCTGAGGCTGCCCTACTTTCCAAGCTGGGAATAAGGCCCTTCTCTTATGGTCTTATAGTGCAGTATGCATATGACAATGGGTCGGTCTTTAGGCCCGAGGTGCTCGATCTCACAGATGATGATCTTCTTGAGAAGTTTGCTTCTGGGTTATCCAATGTTGCTTCTCTCTCCATGGTTCTCTCATACCCGACGCTTGCTGCTGCACCTCACATGATTGTTAATGGCTACAAGAATGTTCTTGCACTCACTGTGGCAACAGAGTACTCGTTCCCAAAGGCTGATCAAGTCAAGCAATACTTGGAGGTTAACACTTTGTCCTTTTAG

Network for GWHGAAZE000688

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00466.21	Ribosomal_L10	8	107	1.20E-16
PF17777.2	RL10P_insert	113	182	9.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02941	RP-LP0, RPLP0	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0042254	biological_process	ribosome biogenesis

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.197
	SRR3591710	White floral bud	35.048
	SRR3591711	White flower	16.549
	SRR3591712	Green floral bud	27.073
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	22.859
	SRR8316896	Juvenile bud stage	20.045
	SRR8316897	Juvenile bud stage	18.705
	SRR8316894	Third green stage	7.289
	SRR8316900	Third green stage	8.483
	SRR8316901	Third green stage	7.956
	SRR8316898	Complete white stage	0.908
	SRR8316899	Complete white stage	17.934
	SRR8316903	Complete white stage	3.540
	SRR8316902	Silver flowering stage	0.439
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.282
	SRR8316907	Gold flowering stage	0.084
	SRR8316908	Gold flowering stage	0.473
SRP132670	SRR6706286	Control	10.187
	SRR6706287	Light intensity 50%	10.230
	SRR6706288	Light intensity 20%	10.838
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.957
	CNS0095593	Slightly white alabastrum(diploid) 2	25.639
	CNS0095594	Slightly white alabastrum(diploid) 3	20.002
	CNS0095595	Whole white alabastrum(diploid) 2	22.238
	CNS0095596	Whole white alabastrum(diploid) 3	22.384
	CNS0095597	Whole white alabastrum(diploid) 4	18.619
	CNS0095598	Silvery flower (diploied) 1	10.026
	CNS0095599	Silvery flower (diploied) 2	6.476
	CNS0095600	Silvery flower (diploied) 3	8.506
	CNS0095601	Golden flower (diploid) 1	13.510
	CNS0095602	Golden flower (diploid) 2	14.912
	CNS0095603	Golden flower (diploid) 3	12.612
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.910
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.363
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.242
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.545
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.476
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.850
	CNS0095610	Silvery flower (tetraploid) 1	1.424
	CNS0095611	Silvery flower (tetraploid) 2	8.206
	CNS0095612	Silvery flower (tetraploid) 3	3.534
	CNS0095613	Golden flower (tetraploid) 1	0.243
	CNS0095614	Golden flower (tetraploid) 2	1.459
	CNS0095615	Golden flower (tetraploid) 3	0.617
CRA001975	CRR073297	Stem 1	22.968
	CRR073298	Stem 2	22.831
	CRR073299	Stem 3	54.201
	CRR073300	Leaf 1	22.074
	CRR073301	Leaf 2	23.127
	CRR073302	Leaf 3	29.532
	CRR073303	Juvenile bud 1	26.876
	CRR073304	Juvenile bud 2	15.467
	CRR073305	Juvenile bud 3	22.310
	CRR073306	Third green 1	0.695
	CRR073307	Third green 2	2.959
	CRR073308	Third green 3	2.607
	CRR073309	Second white 1	0.072
	CRR073310	Second white 2	0.045
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.102
	CRR073314	Silver flowering 3	0.070
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000