Detail information of GWHGAAZE000695


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006488487.10PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like isoform X4 [Citrus sinensis]
Swissprottr|O82392|THIC_ARATH0Phosphomethylpyrimidine synthase, chloroplastic (Precursor)
trEMBLtr|A0A061GWD2|A0A061GWD2_THECC0ThiaminC isoform 1 {ECO:0000313|EMBL:EOY33786.1}
TAIR10AT2G29630.30thiaminC

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1415215014155251-
GWHAAZE00000001mRNA1415215014155251-
GWHAAZE00000001exon1415215014152830-
GWHAAZE00000001exon1415323614154062-
GWHAAZE00000001exon1415464414154771-
GWHAAZE00000001exon1415494414155251-
GWHAAZE00000001CDS1415494414155251-
GWHAAZE00000001CDS1415464414154771-
GWHAAZE00000001CDS1415323614154062-
GWHAAZE00000001CDS1415215014152830-
Transcript Sequence

Network for GWHGAAZE000695

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01964.19ThiC_Rad_SAM1675875.30E-196
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03147thiC Metabolic pathways map01100
Thiamine metabolismmap00730

Gene Ontology

GO term OntologyName
GO:0009228biological_processthiamine biosynthetic process
GO:0051536molecular_functioniron-sulfur cluster binding
GO:0016830molecular_functioncarbon-carbon lyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf66.968
SRR3591706second leaf141.454
SRR3591707mature leaf140.866
SRR3591708Shoot apex76.962
SRR3591709Stem38.813
SRR3591710White floral bud70.611
SRR3591711White flower59.332
SRR3591712Green floral bud107.971
SRR3591713Yellow flower44.266
SRP173429 SRR8316895Juvenile bud stage 59.023
SRR8316896Juvenile bud stage 64.383
SRR8316897Juvenile bud stage 43.885
SRR8316894Third green stage 36.987
SRR8316900Third green stage 132.116
SRR8316901Third green stage 98.002
SRR8316898Complete white stage 36.028
SRR8316899Complete white stage 89.955
SRR8316903Complete white stage 56.765
SRR8316902Silver flowering stage43.713
SRR8316904Silver flowering stage55.863
SRR8316905Silver flowering stage34.194
SRR8316906Gold flowering stage 74.501
SRR8316907Gold flowering stage 84.265
SRR8316908Gold flowering stage 66.280
SRP132670SRR6706286Control139.661
SRR6706287Light intensity 50%127.321
SRR6706288Light intensity 20%147.273
CNP0000432CNS0095592Slightly white alabastrum(diploid) 134.648
CNS0095593Slightly white alabastrum(diploid) 234.599
CNS0095594Slightly white alabastrum(diploid) 323.314
CNS0095595Whole white alabastrum(diploid) 239.997
CNS0095596Whole white alabastrum(diploid) 344.589
CNS0095597Whole white alabastrum(diploid) 439.994
CNS0095598Silvery flower (diploied) 174.085
CNS0095599Silvery flower (diploied) 264.453
CNS0095600Silvery flower (diploied) 387.996
CNS0095601Golden flower (diploid) 155.917
CNS0095602Golden flower (diploid) 269.320
CNS0095603Golden flower (diploid) 364.928
CNS0095604Slightly white alabastrum(tetraploid) 151.074
CNS0095605Slightly white alabastrum(tetraploid) 241.002
CNS0095606Slightly white alabastrum(tetraploid) 388.658
CNS0095607Whole white alabastrum(tetraploid) 128.571
CNS0095608Whole white alabastrum(tetraploid) 230.185
CNS0095609Whole white alabastrum(tetraploid) 381.829
CNS0095610Silvery flower (tetraploid) 151.690
CNS0095611Silvery flower (tetraploid) 280.863
CNS0095612Silvery flower (tetraploid) 358.875
CNS0095613Golden flower (tetraploid) 118.876
CNS0095614Golden flower (tetraploid) 229.654
CNS0095615Golden flower (tetraploid) 321.753
CRA001975CRR073297Stem 1195.019
CRR073298Stem 2169.164
CRR073299Stem 3199.382
CRR073300Leaf 1130.800
CRR073301Leaf 2135.381
CRR073302Leaf 3141.717
CRR073303Juvenile bud 1152.628
CRR073304Juvenile bud 2186.105
CRR073305Juvenile bud 3153.373
CRR073306Third green 1139.666
CRR073307Third green 291.814
CRR073308Third green 394.354
CRR073309Second white 1163.428
CRR073310Second white 280.209
CRR073311Second white 368.297
CRR073312Silver flowering 143.727
CRR073313Silver flowering 244.331
CRR073314Silver flowering 344.790
CRR073315Gold flowering 1458.605
CRR073316Gold flowering 2633.814
CRR073317Gold flowering 3594.665
CRR073318Tawny withering 138.568
CRR073319Tawny withering 226.997
CRR073320Tawny withering 325.365