Gene detail

Detail information of GWHGAAZE000697

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007016175.1	0	Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
Swissprot	tr\|Q94KD8\|BXL2_ARATH	2E-38	Probable beta-D-xylosidase 2 (Precursor)
trEMBL	tr\|A0A061GZX5\|A0A061GZX5_THECC	0	Glycosyl hydrolase family protein isoform 1 {ECO:0000313\|EMBL:EOY33794.1}
TAIR10	AT3G47000.1	0	Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14194169	14199993	+
GWHAAZE00000001	mRNA	14194169	14199993	+
GWHAAZE00000001	exon	14194169	14194340	+
GWHAAZE00000001	exon	14195172	14195376	+
GWHAAZE00000001	exon	14196157	14196247	+
GWHAAZE00000001	exon	14197122	14197267	+
GWHAAZE00000001	exon	14197393	14197636	+
GWHAAZE00000001	exon	14198251	14198355	+
GWHAAZE00000001	exon	14198447	14198629	+
GWHAAZE00000001	exon	14198772	14198973	+
GWHAAZE00000001	exon	14199530	14199993	+
GWHAAZE00000001	CDS	14194169	14194340	+
GWHAAZE00000001	CDS	14195172	14195376	+
GWHAAZE00000001	CDS	14196157	14196247	+
GWHAAZE00000001	CDS	14197122	14197267	+
GWHAAZE00000001	CDS	14197393	14197636	+
GWHAAZE00000001	CDS	14198251	14198355	+
GWHAAZE00000001	CDS	14198447	14198629	+
GWHAAZE00000001	CDS	14198772	14198973	+
GWHAAZE00000001	CDS	14199530	14199993	+

Transcript Sequence
>GWHTAAZE000699 AAGGAAGCAAAAATGGCAGATATCAATTGCATTTACAAGAACCCAAATGCACCCATTGAAGAAAGAATCAAAGACCTCCTCTCCCGAATGACCCTGGAAGAGAAGATCGGCCAAATGACCCAGATCGAAAGAAGTGTCGCCACTCCTTCCGCCATTAAAAACCTCTTCATTGGAAGTGTACTGAGTGGTGGGGGAAGTAAACCATTCGTGGGAGCAAATTCAGCCGATTGGGCAGATTTTGTGGACGGATTGCAGAAGGGGGCACTTGAATCGAGGCTGGGCATTCCGATTTTCTATGGGATTGATGCTGTTCATGGCAATAGTATTGCTTATGGTGCCACTATTTTTCCTCATCATGTTGGCCTTGGAGCCACTAGAGATGCAGATTTGGCACGAAGGATTGGTGTTGTAACAGCTCTAGAAGTAAGGGCCAGCGGTATCCAATACGATTTCACTCCATGTGTTGCTGTATGCAGAGATCCTAGGTGGGGAAGATGTTACGAGAGTTTCAGTGAGGACACTGAAGTGGTCAGAAAGATGACTTCCATGGTAGTAGGCTTGCAAGGGCAACCACCCGAAGGACACCCAAAGGGATACCCTTTTTTAGCTGGAAGAAACAATGTTATTGCATGTGCCAAGCATTTTGTTGGCGATGGGGGTACCCACCAAGGAAAAAATGAGGGCGATACTTTAGTATCATATGAAGAATTGGAGAGGATCCATATGGCGCCTTATCTCGACTGCATTTCTCAGGGAGTTTGCACTGTTATGGCATCCTACTCTAGTTGGAACGGAAGAAAATTGCATGCTGACGAATTTCTCTTAACACAAATTTTGAAAAACAAGCTTGGATTCAAGGGTATGCTGATTTCGGACTGGGAAGCACTTGATCGACTTTCACATCCTCGTGGTTCAGAATATCGAAAGTGTGTTTTGTCTACCGTGAATGCAGGAATCGATATGGTGATGGTACCTTTTAGATATCAATTATTTCTGGAGGATTTGATGCATCTGGTGAAGTCAGGGGAGATACCAATGGCTAGAATTGATGATGCCGTTGAGCGGATCTTGAGAGTCAAATTTGTTGCTGGACTTTTTGAATATCCTCTCAGTGATAGATCTTTGCTAGATAAAGTTGGTTGCAAGATGCATAGAGACCTAGCACGAGAAGCAGTTCGCAAGTCTTTGGTACTCTTAAAGAATGGAAAGGATCCAAAGAAACCATTTCTTCCACTAGAGAAGAATGCTAAAAAAATTCTTGTTGCTGGAATACACGCTGATGATCTCGGATATCAATGTGGAGGGTGGACATCCAAATGGGATGGCACCAGTGGAAGATTTACTATTGGCACAACCATTTTAGACGCCGTTAAAGAAGCAGTGGGAGACAAAACAGAAGTAGTATATGAGAAAAACCCACCACCAGAAGCCTTTGCTGGACAAGATTTTGCTTATGCGATTGTAGCCGTGGGCGAGGCTCCATATGTAGAAACCGGTGGTGATAATATGGAGCTCACAATCCCATTCAATGGAGCCGAACTAATAAGCTCAATAGCTGATAAAGTTCCTACGCTAGCCATTCTCATCTCTGGTAGGCCCCTGGTTATAGAGCCGTGGCTCTTGGACAAAATGGACGCATTTATTGCGGCTTGGTTGCCAGGCACTGAAGGAGGCGGGATTGCGGATGTTATATTCGGCGATCATGAGTTCCAAGGACGACTACCTGTTACATGGTTTAAAAATGTTGACCAATTGCCTATGCATGCTCAACAAAACTCGTTGACCCGTTATTTCACATCGGCTATGGGCTAA

Network for GWHGAAZE000697

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	31	359	1.30E-75
PF01915.23	Glyco_hydro_3_C	396	592	1.00E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05349	bglX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.464
	SRR3591706	second leaf	119.638
	SRR3591707	mature leaf	269.343
	SRR3591708	Shoot apex	44.185
	SRR3591709	Stem	124.387
	SRR3591710	White floral bud	18.595
	SRR3591711	White flower	88.930
	SRR3591712	Green floral bud	38.722
	SRR3591713	Yellow flower	25.690
SRP173429	SRR8316895	Juvenile bud stage	43.846
	SRR8316896	Juvenile bud stage	64.404
	SRR8316897	Juvenile bud stage	15.395
	SRR8316894	Third green stage	22.899
	SRR8316900	Third green stage	58.369
	SRR8316901	Third green stage	55.006
	SRR8316898	Complete white stage	13.294
	SRR8316899	Complete white stage	110.041
	SRR8316903	Complete white stage	26.156
	SRR8316902	Silver flowering stage	2.216
	SRR8316904	Silver flowering stage	2.098
	SRR8316905	Silver flowering stage	0.592
	SRR8316906	Gold flowering stage	2.415
	SRR8316907	Gold flowering stage	2.261
	SRR8316908	Gold flowering stage	3.509
SRP132670	SRR6706286	Control	91.203
	SRR6706287	Light intensity 50%	86.957
	SRR6706288	Light intensity 20%	85.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.021
	CNS0095593	Slightly white alabastrum(diploid) 2	28.913
	CNS0095594	Slightly white alabastrum(diploid) 3	32.616
	CNS0095595	Whole white alabastrum(diploid) 2	26.858
	CNS0095596	Whole white alabastrum(diploid) 3	15.292
	CNS0095597	Whole white alabastrum(diploid) 4	16.816
	CNS0095598	Silvery flower (diploied) 1	40.448
	CNS0095599	Silvery flower (diploied) 2	43.272
	CNS0095600	Silvery flower (diploied) 3	13.887
	CNS0095601	Golden flower (diploid) 1	46.944
	CNS0095602	Golden flower (diploid) 2	21.560
	CNS0095603	Golden flower (diploid) 3	20.127
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.409
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.690
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.282
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.983
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.524
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.523
	CNS0095610	Silvery flower (tetraploid) 1	1.409
	CNS0095611	Silvery flower (tetraploid) 2	5.071
	CNS0095612	Silvery flower (tetraploid) 3	1.274
	CNS0095613	Golden flower (tetraploid) 1	0.482
	CNS0095614	Golden flower (tetraploid) 2	1.895
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	34.663
	CRR073298	Stem 2	31.107
	CRR073299	Stem 3	31.094
	CRR073300	Leaf 1	27.401
	CRR073301	Leaf 2	24.738
	CRR073302	Leaf 3	24.910
	CRR073303	Juvenile bud 1	22.434
	CRR073304	Juvenile bud 2	12.004
	CRR073305	Juvenile bud 3	23.597
	CRR073306	Third green 1	1.232
	CRR073307	Third green 2	0.506
	CRR073308	Third green 3	1.463
	CRR073309	Second white 1	0.215
	CRR073310	Second white 2	0.150
	CRR073311	Second white 3	1.225
	CRR073312	Silver flowering 1	0.156
	CRR073313	Silver flowering 2	0.118
	CRR073314	Silver flowering 3	0.146
	CRR073315	Gold flowering 1	80.276
	CRR073316	Gold flowering 2	146.021
	CRR073317	Gold flowering 3	112.611
	CRR073318	Tawny withering 1	27.188
	CRR073319	Tawny withering 2	21.501
	CRR073320	Tawny withering 3	22.476