Gene detail

Detail information of GWHGAAZE000719

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282278.1	4.2729E-171	PREDICTED: eukaryotic translation initiation factor 3 subunit G-B [Vitis vinifera]
Swissprot	tr\|Q9LJH8\|UBP1C_ARATH	1E-12	Oligouridylate-binding protein 1C
trEMBL	tr\|F6GUX9\|F6GUX9_VITVI	2E-171	Eukaryotic translation initiation factor 3 subunit G {ECO:0000256\|HAMAP-Rule:MF_03006}
TAIR10	AT3G11400.1	1E-110	eukaryotic translation initiation factor 3G1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14592747	14598946	+
GWHAAZE00000001	mRNA	14592747	14598946	+
GWHAAZE00000001	exon	14592747	14593101	+
GWHAAZE00000001	exon	14598414	14598946	+
GWHAAZE00000001	CDS	14592747	14593101	+
GWHAAZE00000001	CDS	14598414	14598946	+

Transcript Sequence
>GWHTAAZE000721 ATGGCGATAGACGCACAGGTTCCGGCCCCCACAATTCCGACGAAGGTCCGATGGGGCGAGCTCGAGGAGGACGACGGTGAAGATCTGGATTTCCTCCTCCCTCCGATCCAAGTAATCGGACCCGACGCTAACGGGCTGAAGAAGGTAATTGAGTACAAGTTCAACGACGAAGGCCACAAGGTCAAAATCACCACCACCACTCGCGTCCGCAAGCTCGCTAATGCTCGCCTCAGCAAGCGAGCAATCGAGCGCCGTTCATGGCCCAAATTCGGCGATGCTGTTCACGAGGATGTCGGTAGTAGGCTCACCATGGTTTCTACAGAAGAAATTGTCCTCGAGCGTCCTAGGGCTCCTGGTACCAAAGCTGAAGAAACTAAGGCCGCTGGAGACCCGTTGGCTAGTAAAGCAGGCCAAGTTCTCATGGTGTGTAGGACTTGCGGCAAGAAGGGTGACCACTGGACCTCTAGGTGCCCCTACAAGGACCTCGCCCCACAAACTGAAAGCTTTGACGACAAGCCACCTACATCAGAAGGTCCATCTGCTACCTCGGGTACTACCAGGTCATCCTATGTTCCTCCAAGCATGCGTCCGGGTGCAAAGGAGAACAGTGGCTCTGATATGAGACGCAGGAATGAAGAGAACTCCGTGCGTGTCACTAATCTCTCGGAGGACACGCGCGAAGCAGACTTGCATGAGCTTTTCCGCACTTTTGGCCATGTGAGCCGCGTTTACGTTGCTCTTGATCAGAAGACGGGCATGAGCAGGGGGTTTGGTTTCGTTAACTTTATGAACAGGGAAGATGCCCAAAAGGCTATCGACAAACTTAACGGGTACGGTTATGATAACCTTATCCTCAGGGTTGAGTGGGCTGCACCTCGGGCCAATTAG

Network for GWHGAAZE000719

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12353.9	eIF3g	38	162	2.10E-35
PF00076.23	RRM_1	216	282	1.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03248	EIF3G	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005852	cellular_component	eukaryotic translation initiation factor 3 complex
GO:0003676	molecular_function	nucleic acid binding
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	101.695
	SRR3591706	second leaf	62.797
	SRR3591707	mature leaf	55.850
	SRR3591708	Shoot apex	119.336
	SRR3591709	Stem	75.584
	SRR3591710	White floral bud	89.644
	SRR3591711	White flower	123.237
	SRR3591712	Green floral bud	114.545
	SRR3591713	Yellow flower	103.890
SRP173429	SRR8316895	Juvenile bud stage	68.131
	SRR8316896	Juvenile bud stage	88.958
	SRR8316897	Juvenile bud stage	48.555
	SRR8316894	Third green stage	33.708
	SRR8316900	Third green stage	105.633
	SRR8316901	Third green stage	107.745
	SRR8316898	Complete white stage	34.319
	SRR8316899	Complete white stage	116.453
	SRR8316903	Complete white stage	59.009
	SRR8316902	Silver flowering stage	53.272
	SRR8316904	Silver flowering stage	50.107
	SRR8316905	Silver flowering stage	28.278
	SRR8316906	Gold flowering stage	86.599
	SRR8316907	Gold flowering stage	106.986
	SRR8316908	Gold flowering stage	109.242
SRP132670	SRR6706286	Control	113.208
	SRR6706287	Light intensity 50%	112.131
	SRR6706288	Light intensity 20%	113.239
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	97.214
	CNS0095593	Slightly white alabastrum(diploid) 2	112.857
	CNS0095594	Slightly white alabastrum(diploid) 3	93.976
	CNS0095595	Whole white alabastrum(diploid) 2	78.056
	CNS0095596	Whole white alabastrum(diploid) 3	81.649
	CNS0095597	Whole white alabastrum(diploid) 4	67.328
	CNS0095598	Silvery flower (diploied) 1	84.191
	CNS0095599	Silvery flower (diploied) 2	78.478
	CNS0095600	Silvery flower (diploied) 3	96.939
	CNS0095601	Golden flower (diploid) 1	68.917
	CNS0095602	Golden flower (diploid) 2	92.616
	CNS0095603	Golden flower (diploid) 3	89.832
	CNS0095604	Slightly white alabastrum(tetraploid) 1	95.868
	CNS0095605	Slightly white alabastrum(tetraploid) 2	91.795
	CNS0095606	Slightly white alabastrum(tetraploid) 3	127.800
	CNS0095607	Whole white alabastrum(tetraploid) 1	61.176
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.401
	CNS0095609	Whole white alabastrum(tetraploid) 3	96.486
	CNS0095610	Silvery flower (tetraploid) 1	95.326
	CNS0095611	Silvery flower (tetraploid) 2	92.715
	CNS0095612	Silvery flower (tetraploid) 3	79.966
	CNS0095613	Golden flower (tetraploid) 1	72.808
	CNS0095614	Golden flower (tetraploid) 2	84.395
	CNS0095615	Golden flower (tetraploid) 3	81.546
CRA001975	CRR073297	Stem 1	107.459
	CRR073298	Stem 2	93.390
	CRR073299	Stem 3	136.330
	CRR073300	Leaf 1	95.133
	CRR073301	Leaf 2	112.293
	CRR073302	Leaf 3	122.895
	CRR073303	Juvenile bud 1	111.098
	CRR073304	Juvenile bud 2	103.804
	CRR073305	Juvenile bud 3	144.585
	CRR073306	Third green 1	78.863
	CRR073307	Third green 2	83.533
	CRR073308	Third green 3	86.051
	CRR073309	Second white 1	101.025
	CRR073310	Second white 2	79.886
	CRR073311	Second white 3	70.297
	CRR073312	Silver flowering 1	93.644
	CRR073313	Silver flowering 2	133.567
	CRR073314	Silver flowering 3	107.602
	CRR073315	Gold flowering 1	69.248
	CRR073316	Gold flowering 2	88.001
	CRR073317	Gold flowering 3	91.112
	CRR073318	Tawny withering 1	135.803
	CRR073319	Tawny withering 2	125.921
	CRR073320	Tawny withering 3	150.564