Gene detail

Detail information of GWHGAAZE000725

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09102.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068ULC5\|A0A068ULC5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313\|EMBL:CDP09102.1}
TAIR10	AT1G07480.2	1E-86	Transcription factor IIA, alpha/beta subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14665283	14676892	+
GWHAAZE00000001	mRNA	14665283	14676892	+
GWHAAZE00000001	exon	14665283	14665405	+
GWHAAZE00000001	exon	14666132	14666302	+
GWHAAZE00000001	exon	14666731	14666943	+
GWHAAZE00000001	exon	14667601	14667652	+
GWHAAZE00000001	exon	14667725	14667789	+
GWHAAZE00000001	exon	14669933	14670052	+
GWHAAZE00000001	exon	14675458	14675595	+
GWHAAZE00000001	exon	14675844	14675904	+
GWHAAZE00000001	exon	14676000	14676040	+
GWHAAZE00000001	exon	14676701	14676784	+
GWHAAZE00000001	exon	14676869	14676892	+
GWHAAZE00000001	CDS	14665283	14665405	+
GWHAAZE00000001	CDS	14666132	14666302	+
GWHAAZE00000001	CDS	14666731	14666943	+
GWHAAZE00000001	CDS	14667601	14667652	+
GWHAAZE00000001	CDS	14667725	14667789	+
GWHAAZE00000001	CDS	14669933	14670052	+
GWHAAZE00000001	CDS	14675458	14675595	+
GWHAAZE00000001	CDS	14675844	14675904	+
GWHAAZE00000001	CDS	14676000	14676040	+
GWHAAZE00000001	CDS	14676701	14676784	+
GWHAAZE00000001	CDS	14676869	14676892	+

Transcript Sequence
>GWHTAAZE000727 ATGGCGAGTTCGACGACAAGCGGTGTATACATCCACGTCATCGAAGACGTCATCAGCAAGGTCCGTGAGGAGTTCGTCAATAATGGCGGACCTGGCGACAGTGTACTCAGCGAGCTCCAAGGAATATGGGAACTGAAAATGATGCAAGCTGGTGCTATACTGGGTCCTATAGATAGGTCTGCAGCATCAAAGCCAACCCCAGGAGGTCCTATCACTCCTGTTCACGATCTTAATGTTCCGTATGAAGGGACTGAGGAGTATGAGACTCCCACCGCTGATTTACTCTTTCCTCCGACTCCATTACAGACTCCAATGCAAACTCCTTTACCAGGAACGGGTCAAACACCTCTGCCAGGAATGGCCCAAACACCTTTGCCGGGAACAGCGGACAGCTCCTTGTACAATATTCCTACTGGTGGCACTCCCATCACACCTCAAGACTACTCTTCCCTAAATGATAATGGTGGAGTGGGAGAGATGAAAGCTGGGAGACCTAGCCCATACATGCCACCACCTGCTCCATGGTTGAACCAAAGGCCCCCACTTGATGTCAATGTTGCTTATGTTGAAGGGCGTGGTGAAGAGGTGGATAGAGGAGCAGCTTCTCATCAACCCATGACACAGGACTTCTTCACGATGTCTGCTGGCAAGCGAAAACGGGATGATCTTGCTTCGCAATATCACAATGGCGGTTACATACCACAGCAAGATGGGGCTGGAGATGATATATCAGATGAATTCAAGGTAGGTCAAGGGAGCCATACTCCGCGTGATGTACCTGCCAGTAACCAAGCTGCACAAGGTATAAGGTTGTCTAGTCGGATTCCTCAAGTTGATGGGCCAATTCCTGATCCTTATGACGATGTGCTTTCCACACCAAATATATACAACTACCAAGGAGTTGTCAATGAAGACTACAATGTTAATACACCTGCTCCACATGACCTACAAGCAGCTACTCCTGCTGCCGTCACTCAGAATGAAGTGACGCGTACCAAGAGCAGGTGGAAATGCATCCTGAAGGATGGCATTATGCACATAAACAATAAGGACATCCTGTTCAATAAGGCAACTGGAGAATTCGAATTCTGA

Network for GWHGAAZE000725

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03153.14	TFIIA	9	96	3.40E-12
PF03153.14	TFIIA	329	363	1.00E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03122	TFIIA1, GTF2A1, TOA1	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter
GO:0005672	cellular_component	transcription factor TFIIA complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.822
	SRR3591706	second leaf	30.929
	SRR3591707	mature leaf	43.451
	SRR3591708	Shoot apex	43.943
	SRR3591709	Stem	43.803
	SRR3591710	White floral bud	63.836
	SRR3591711	White flower	69.536
	SRR3591712	Green floral bud	55.737
	SRR3591713	Yellow flower	57.169
SRP173429	SRR8316895	Juvenile bud stage	32.997
	SRR8316896	Juvenile bud stage	52.909
	SRR8316897	Juvenile bud stage	16.698
	SRR8316894	Third green stage	17.994
	SRR8316900	Third green stage	53.593
	SRR8316901	Third green stage	58.369
	SRR8316898	Complete white stage	26.627
	SRR8316899	Complete white stage	73.538
	SRR8316903	Complete white stage	34.624
	SRR8316902	Silver flowering stage	29.532
	SRR8316904	Silver flowering stage	35.289
	SRR8316905	Silver flowering stage	18.728
	SRR8316906	Gold flowering stage	55.915
	SRR8316907	Gold flowering stage	65.117
	SRR8316908	Gold flowering stage	60.000
SRP132670	SRR6706286	Control	67.133
	SRR6706287	Light intensity 50%	68.841
	SRR6706288	Light intensity 20%	66.883
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.760
	CNS0095593	Slightly white alabastrum(diploid) 2	29.689
	CNS0095594	Slightly white alabastrum(diploid) 3	26.758
	CNS0095595	Whole white alabastrum(diploid) 2	30.254
	CNS0095596	Whole white alabastrum(diploid) 3	27.352
	CNS0095597	Whole white alabastrum(diploid) 4	30.723
	CNS0095598	Silvery flower (diploied) 1	27.789
	CNS0095599	Silvery flower (diploied) 2	27.157
	CNS0095600	Silvery flower (diploied) 3	63.493
	CNS0095601	Golden flower (diploid) 1	23.267
	CNS0095602	Golden flower (diploid) 2	56.409
	CNS0095603	Golden flower (diploid) 3	56.374
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.999
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.593
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.956
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.482
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.307
	CNS0095610	Silvery flower (tetraploid) 1	63.704
	CNS0095611	Silvery flower (tetraploid) 2	59.427
	CNS0095612	Silvery flower (tetraploid) 3	41.199
	CNS0095613	Golden flower (tetraploid) 1	42.676
	CNS0095614	Golden flower (tetraploid) 2	58.535
	CNS0095615	Golden flower (tetraploid) 3	62.362
CRA001975	CRR073297	Stem 1	61.360
	CRR073298	Stem 2	57.298
	CRR073299	Stem 3	58.688
	CRR073300	Leaf 1	59.787
	CRR073301	Leaf 2	63.871
	CRR073302	Leaf 3	47.883
	CRR073303	Juvenile bud 1	56.145
	CRR073304	Juvenile bud 2	54.873
	CRR073305	Juvenile bud 3	68.783
	CRR073306	Third green 1	41.591
	CRR073307	Third green 2	35.191
	CRR073308	Third green 3	41.982
	CRR073309	Second white 1	42.377
	CRR073310	Second white 2	35.637
	CRR073311	Second white 3	32.118
	CRR073312	Silver flowering 1	34.168
	CRR073313	Silver flowering 2	39.394
	CRR073314	Silver flowering 3	31.654
	CRR073315	Gold flowering 1	37.288
	CRR073316	Gold flowering 2	40.657
	CRR073317	Gold flowering 3	38.959
	CRR073318	Tawny withering 1	43.501
	CRR073319	Tawny withering 2	33.573
	CRR073320	Tawny withering 3	39.355