Gene detail

Detail information of GWHGAAZE000732

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004294651.1	6.2537E-140	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|P0CH30\|RING1_GOSHI	2E-35	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|F6GUZ2\|F6GUZ2_VITVI	6E-135	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43551.1}
TAIR10	AT5G59550.1	3E-64	zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14829173	14830288	+
GWHAAZE00000001	mRNA	14829173	14830288	+
GWHAAZE00000001	exon	14829173	14829304	+
GWHAAZE00000001	exon	14829377	14829440	+
GWHAAZE00000001	exon	14829471	14829876	+
GWHAAZE00000001	exon	14829910	14830288	+
GWHAAZE00000001	CDS	14829173	14829304	+
GWHAAZE00000001	CDS	14829377	14829440	+
GWHAAZE00000001	CDS	14829471	14829876	+
GWHAAZE00000001	CDS	14829910	14830288	+

Transcript Sequence
>GWHTAAZE000734 ATGTCGAGAACAACGGCGTCGTATTGGTGTTACCGGTGTTCTCGTTTTGTTAGGCTTCCGACCGAGGATAACATCGCATGTCCGTACTGCGACGGCGGATTCGTCGAAGCGGTGGACGCCACCGCTTCTCCGGGGAGACGGAACAACGGCGATCGGTCGCCGTTTAATCCGGTGATCGTTTTGCGAGGTGAATCCGAACGCAGTTTCGAGTTGTATTACGATGACGGTGCCGGATCCGGCCTACAACCGTTGCCGGCGACGATGTCGGAGTTTTTGATGGGATCAGGTTTCGATCGACTGCTCGAGCAGCTGGCGCAGATCGAGATCAACGGTTTTAGCCGCTCCGATCAGCCTCCGGCGTCAAAAGTCGCCGTCGAATCGTTACCGACGATCGAGATCGCCGATGTTCATATAGACTCCGAATCGCACTGTGCAGTGTGTAAGGAAGCATTTCTTCTGGGATCAGAAGCTCGAGAAATGCCGTGTAAGCACATCTACCACTCCGATTGTATTTTGCCTTGGCTTTCTCTTCGTAATTCGTGTCCTGTTTGTCGCCACGAATTGCCTACCGATGCTTCGAATTTACCGGAAAATAGTAACGGATTACCTGGCGGTGGATTCGCCGTAGGGAGATTCTCAGGAGGAAGAAGAGGAGGTGAGAGAGAGCTTCCAGTTGTGTATACAGAAATGGATGGTGGATTTAACAATGGCGGTGGTGCTCCTAGAAGGATAAGTTGGGGATCTACAAGGAGTAGAACTAGAGAAGGTAGATTCGGAAGAGCTTTTCGCAATCTATTCTCATTTCTAGGGAGATTAAGGTCGTCTTCTCCTACATCTTCGCATTCACATTCTAGTGGTGTGGAGTCCGGATCTTCAATGATTAGAAGTCGGAGTATCTCCGGTTCTGTTTTTAGTAGGTACGTGAGGAGGCGTACTAGGGCTTTGATTTTGGAGGACCAGAATGAAATGTCTAGATGGTAA

Network for GWHGAAZE000732

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14369.7	zinc_ribbon_9	7	36	1.40E-13
PF13639.7	zf-RING_2	143	185	4.50E-10
PF06547.13	DUF1117	202	308	1.60E-34

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0061630	molecular_function	ubiquitin protein ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.066
	SRR3591706	second leaf	25.821
	SRR3591707	mature leaf	27.276
	SRR3591708	Shoot apex	32.242
	SRR3591709	Stem	53.765
	SRR3591710	White floral bud	27.908
	SRR3591711	White flower	41.321
	SRR3591712	Green floral bud	29.562
	SRR3591713	Yellow flower	18.125
SRP173429	SRR8316895	Juvenile bud stage	13.176
	SRR8316896	Juvenile bud stage	12.978
	SRR8316897	Juvenile bud stage	5.163
	SRR8316894	Third green stage	7.451
	SRR8316900	Third green stage	17.796
	SRR8316901	Third green stage	18.537
	SRR8316898	Complete white stage	12.183
	SRR8316899	Complete white stage	57.540
	SRR8316903	Complete white stage	13.999
	SRR8316902	Silver flowering stage	10.578
	SRR8316904	Silver flowering stage	12.861
	SRR8316905	Silver flowering stage	5.431
	SRR8316906	Gold flowering stage	16.118
	SRR8316907	Gold flowering stage	13.785
	SRR8316908	Gold flowering stage	15.412
SRP132670	SRR6706286	Control	13.344
	SRR6706287	Light intensity 50%	13.194
	SRR6706288	Light intensity 20%	13.733
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.560
	CNS0095593	Slightly white alabastrum(diploid) 2	17.157
	CNS0095594	Slightly white alabastrum(diploid) 3	13.574
	CNS0095595	Whole white alabastrum(diploid) 2	11.674
	CNS0095596	Whole white alabastrum(diploid) 3	10.094
	CNS0095597	Whole white alabastrum(diploid) 4	14.167
	CNS0095598	Silvery flower (diploied) 1	32.202
	CNS0095599	Silvery flower (diploied) 2	17.445
	CNS0095600	Silvery flower (diploied) 3	30.395
	CNS0095601	Golden flower (diploid) 1	21.707
	CNS0095602	Golden flower (diploid) 2	26.330
	CNS0095603	Golden flower (diploid) 3	25.087
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.778
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.651
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.351
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.669
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.082
	CNS0095610	Silvery flower (tetraploid) 1	28.165
	CNS0095611	Silvery flower (tetraploid) 2	28.034
	CNS0095612	Silvery flower (tetraploid) 3	18.429
	CNS0095613	Golden flower (tetraploid) 1	12.241
	CNS0095614	Golden flower (tetraploid) 2	26.340
	CNS0095615	Golden flower (tetraploid) 3	12.239
CRA001975	CRR073297	Stem 1	30.282
	CRR073298	Stem 2	33.388
	CRR073299	Stem 3	45.947
	CRR073300	Leaf 1	40.126
	CRR073301	Leaf 2	45.675
	CRR073302	Leaf 3	51.785
	CRR073303	Juvenile bud 1	46.571
	CRR073304	Juvenile bud 2	49.283
	CRR073305	Juvenile bud 3	69.066
	CRR073306	Third green 1	46.971
	CRR073307	Third green 2	40.146
	CRR073308	Third green 3	34.319
	CRR073309	Second white 1	42.207
	CRR073310	Second white 2	34.143
	CRR073311	Second white 3	25.753
	CRR073312	Silver flowering 1	27.833
	CRR073313	Silver flowering 2	35.114
	CRR073314	Silver flowering 3	22.043
	CRR073315	Gold flowering 1	14.211
	CRR073316	Gold flowering 2	18.120
	CRR073317	Gold flowering 3	25.564
	CRR073318	Tawny withering 1	58.296
	CRR073319	Tawny withering 2	65.129
	CRR073320	Tawny withering 3	69.465