Gene detail

Detail information of GWHGAAZE000733

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007016359.1	3.5319E-137	Binding protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9M2S6\|SDIR1_ARATH	5E-120	E3 ubiquitin-protein ligase SDIR1
trEMBL	tr\|A0A061H012\|A0A061H012_THECC	1E-137	Binding protein, putative isoform 1 {ECO:0000313\|EMBL:EOY33979.1}
TAIR10	AT3G55530.1	1E-69	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14842158	14845623	+
GWHAAZE00000001	mRNA	14842158	14845623	+
GWHAAZE00000001	exon	14842158	14842235	+
GWHAAZE00000001	exon	14842591	14842645	+
GWHAAZE00000001	exon	14842735	14842787	+
GWHAAZE00000001	exon	14842898	14843126	+
GWHAAZE00000001	exon	14843663	14843777	+
GWHAAZE00000001	exon	14844733	14844778	+
GWHAAZE00000001	exon	14845136	14845249	+
GWHAAZE00000001	exon	14845498	14845623	+
GWHAAZE00000001	CDS	14842158	14842235	+
GWHAAZE00000001	CDS	14842591	14842645	+
GWHAAZE00000001	CDS	14842735	14842787	+
GWHAAZE00000001	CDS	14842898	14843126	+
GWHAAZE00000001	CDS	14843663	14843777	+
GWHAAZE00000001	CDS	14844733	14844778	+
GWHAAZE00000001	CDS	14845136	14845249	+
GWHAAZE00000001	CDS	14845498	14845623	+

Transcript Sequence
>GWHTAAZE000735 ATGAATTTTCTTATTCGTGAAGCAAGACCTGATATTGAAAGTGGATTATCAGGACTTATCCCCGACCGACCTGCTGTGCGTGTACATGCAACTCGACCAATTAATACCAATTCACTGGCTTTTCTTGTCACAGTTCTTTTGCTCTTCACAATATTGAATTCTAACCAAATGTCCCCTAACTTTCTGCTCTGGCTAGTTCTTGGTGCTTTTATATTGGCAACAAGCCTTAGAATGTATGCAACTTGCCAACAACTGAGGGCTCAGGCCCAAGCTCATGCTGCAGCAGCTAGTGGCTTGTTAAGTCGAGCTGAATTCCGTTTTCACATGCCACCATCAATAGCTTTTGCAACTAGAGGGAGATTACATGGATTGAGGCTCCAGCTTGCGCTCCTTGACCGTGCATTTGATGACCTAGATTATGAAACTCTGAGAACTTTGGATTCTGATAATGGTTCAAGTACTCCTTCAATGAATGAAGAGGAAATAAACTCCTTACCTGTTCACGTGTACAAGGTCACTAGCCTACAGAGCGAGGGCTCCTTGCAGCAACCGACATCTTCCACAGCTATGGCAGAGGGTAAAAAGGCTGATGCAATCACCAGGGCTTCGGATGATGAATTGACATGCAGCATTTGCTTGGAACAAGCTAAAAGGGGAGAGCTTATTCGTAGCTTGCCATGTTTACATCAGTTCCATGCTAACTGCATTGATCCATGGCTGCGGCAGCAAGGGACGTGTCCTGTTTGCAAACTTACAGTGGGGTCAAGATGGCAAGAGAACAGGGACACTGAAACAGATGGAGAGGATATGGTTTAA

Network for GWHGAAZE000733

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	208	250	2.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.132
	SRR3591706	second leaf	21.626
	SRR3591707	mature leaf	8.935
	SRR3591708	Shoot apex	29.373
	SRR3591709	Stem	36.060
	SRR3591710	White floral bud	10.290
	SRR3591711	White flower	9.468
	SRR3591712	Green floral bud	12.968
	SRR3591713	Yellow flower	0.806
SRP173429	SRR8316895	Juvenile bud stage	9.908
	SRR8316896	Juvenile bud stage	11.688
	SRR8316897	Juvenile bud stage	8.093
	SRR8316894	Third green stage	6.146
	SRR8316900	Third green stage	11.170
	SRR8316901	Third green stage	10.085
	SRR8316898	Complete white stage	0.819
	SRR8316899	Complete white stage	12.913
	SRR8316903	Complete white stage	5.020
	SRR8316902	Silver flowering stage	2.048
	SRR8316904	Silver flowering stage	1.869
	SRR8316905	Silver flowering stage	0.810
	SRR8316906	Gold flowering stage	1.780
	SRR8316907	Gold flowering stage	2.110
	SRR8316908	Gold flowering stage	1.611
SRP132670	SRR6706286	Control	15.622
	SRR6706287	Light intensity 50%	14.555
	SRR6706288	Light intensity 20%	14.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.926
	CNS0095593	Slightly white alabastrum(diploid) 2	18.454
	CNS0095594	Slightly white alabastrum(diploid) 3	18.945
	CNS0095595	Whole white alabastrum(diploid) 2	12.718
	CNS0095596	Whole white alabastrum(diploid) 3	12.884
	CNS0095597	Whole white alabastrum(diploid) 4	13.374
	CNS0095598	Silvery flower (diploied) 1	16.858
	CNS0095599	Silvery flower (diploied) 2	15.275
	CNS0095600	Silvery flower (diploied) 3	5.367
	CNS0095601	Golden flower (diploid) 1	12.009
	CNS0095602	Golden flower (diploid) 2	6.338
	CNS0095603	Golden flower (diploid) 3	6.115
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.069
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.127
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.757
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.191
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.410
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.479
	CNS0095610	Silvery flower (tetraploid) 1	4.558
	CNS0095611	Silvery flower (tetraploid) 2	6.036
	CNS0095612	Silvery flower (tetraploid) 3	2.472
	CNS0095613	Golden flower (tetraploid) 1	2.156
	CNS0095614	Golden flower (tetraploid) 2	1.264
	CNS0095615	Golden flower (tetraploid) 3	1.349
CRA001975	CRR073297	Stem 1	17.418
	CRR073298	Stem 2	17.588
	CRR073299	Stem 3	20.762
	CRR073300	Leaf 1	20.821
	CRR073301	Leaf 2	15.742
	CRR073302	Leaf 3	11.969
	CRR073303	Juvenile bud 1	14.803
	CRR073304	Juvenile bud 2	7.058
	CRR073305	Juvenile bud 3	13.279
	CRR073306	Third green 1	1.092
	CRR073307	Third green 2	2.073
	CRR073308	Third green 3	1.744
	CRR073309	Second white 1	0.049
	CRR073310	Second white 2	0.211
	CRR073311	Second white 3	0.614
	CRR073312	Silver flowering 1	0.357
	CRR073313	Silver flowering 2	0.198
	CRR073314	Silver flowering 3	0.062
	CRR073315	Gold flowering 1	6.509
	CRR073316	Gold flowering 2	5.586
	CRR073317	Gold flowering 3	7.717
	CRR073318	Tawny withering 1	9.792
	CRR073319	Tawny withering 2	12.689
	CRR073320	Tawny withering 3	14.210