Detail information of GWHGAAZE000738


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011089500.10PREDICTED: scarecrow-like protein 30 [Sesamum indicum]
Swissprottr|P0C883|SCL33_ARATH0Scarecrow-like protein 33
trEMBLtr|B9T680|B9T680_RICCO0Transcription factor, putative {ECO:0000313|EMBL:EEF28636.1}
TAIR10AT2G29060.12E-158GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1491634314918400-
GWHAAZE00000001mRNA1491634314918400-
GWHAAZE00000001exon1491634314918400-
GWHAAZE00000001CDS1491634314918400-
Transcript Sequence

Network for GWHGAAZE000738

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS3106818.80E-113
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.665
SRR3591706second leaf10.981
SRR3591707mature leaf22.256
SRR3591708Shoot apex17.491
SRR3591709Stem60.670
SRR3591710White floral bud10.170
SRR3591711White flower24.411
SRR3591712Green floral bud9.693
SRR3591713Yellow flower12.177
SRP173429 SRR8316895Juvenile bud stage 5.901
SRR8316896Juvenile bud stage 5.287
SRR8316897Juvenile bud stage 2.502
SRR8316894Third green stage 3.053
SRR8316900Third green stage 4.371
SRR8316901Third green stage 4.832
SRR8316898Complete white stage 1.914
SRR8316899Complete white stage 6.993
SRR8316903Complete white stage 1.957
SRR8316902Silver flowering stage2.803
SRR8316904Silver flowering stage4.798
SRR8316905Silver flowering stage3.235
SRR8316906Gold flowering stage 10.368
SRR8316907Gold flowering stage 7.678
SRR8316908Gold flowering stage 12.699
SRP132670SRR6706286Control4.243
SRR6706287Light intensity 50%4.968
SRR6706288Light intensity 20%5.227
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.068
CNS0095593Slightly white alabastrum(diploid) 24.311
CNS0095594Slightly white alabastrum(diploid) 35.004
CNS0095595Whole white alabastrum(diploid) 24.407
CNS0095596Whole white alabastrum(diploid) 31.727
CNS0095597Whole white alabastrum(diploid) 43.871
CNS0095598Silvery flower (diploied) 115.448
CNS0095599Silvery flower (diploied) 214.063
CNS0095600Silvery flower (diploied) 311.704
CNS0095601Golden flower (diploid) 115.333
CNS0095602Golden flower (diploid) 219.434
CNS0095603Golden flower (diploid) 317.075
CNS0095604Slightly white alabastrum(tetraploid) 11.613
CNS0095605Slightly white alabastrum(tetraploid) 20.872
CNS0095606Slightly white alabastrum(tetraploid) 34.063
CNS0095607Whole white alabastrum(tetraploid) 10.483
CNS0095608Whole white alabastrum(tetraploid) 20.548
CNS0095609Whole white alabastrum(tetraploid) 32.909
CNS0095610Silvery flower (tetraploid) 16.735
CNS0095611Silvery flower (tetraploid) 25.790
CNS0095612Silvery flower (tetraploid) 36.637
CNS0095613Golden flower (tetraploid) 16.381
CNS0095614Golden flower (tetraploid) 210.468
CNS0095615Golden flower (tetraploid) 37.396
CRA001975CRR073297Stem 17.063
CRR073298Stem 27.004
CRR073299Stem 39.446
CRR073300Leaf 18.062
CRR073301Leaf 29.283
CRR073302Leaf 39.706
CRR073303Juvenile bud 16.493
CRR073304Juvenile bud 27.824
CRR073305Juvenile bud 37.633
CRR073306Third green 110.446
CRR073307Third green 27.791
CRR073308Third green 311.831
CRR073309Second white 111.704
CRR073310Second white 28.453
CRR073311Second white 38.925
CRR073312Silver flowering 111.560
CRR073313Silver flowering 211.802
CRR073314Silver flowering 37.367
CRR073315Gold flowering 19.216
CRR073316Gold flowering 211.176
CRR073317Gold flowering 311.516
CRR073318Tawny withering 126.639
CRR073319Tawny withering 240.382
CRR073320Tawny withering 330.412