Gene detail

Detail information of GWHGAAZE000739

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009606498.1	0	PREDICTED: scarecrow-like protein 14 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9XE58\|SCL14_ARATH	0	Scarecrow-like protein 14
trEMBL	tr\|A0A068ULG0\|A0A068ULG0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313\|EMBL:CDP09074.1}
TAIR10	AT1G07530.1	4E-171	SCARECROW-like 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14944259	14945803	-
GWHAAZE00000001	mRNA	14944259	14945803	-
GWHAAZE00000001	exon	14945749	14945803	-
GWHAAZE00000001	exon	14945503	14945718	-
GWHAAZE00000001	exon	14944259	14945457	-
GWHAAZE00000001	CDS	14945749	14945803	-
GWHAAZE00000001	CDS	14945503	14945718	-
GWHAAZE00000001	CDS	14944259	14945457	-

Transcript Sequence
>GWHTAAZE000741 ATGGAGGAAGCTAGTAAATTCCTTCCGAGTTATAATCCGTTAGTTATCGATTTGGAAGATGATGTGGAGTATGTGGTTAAGCAAGAAAAGGAAGAGAGAGAAAACTCTCCTAATGGCTCGAGGGGGAGGAAGCACTATTATCAAGAAGATGATGGGTTCGAAGAAGAGAGGAATAGCAAGCAATTGGCAGTATACGTGGAAGAGGTCGAGCTGTCGGAGATGTTCGATAGAGTTTTGCTCCGCACTGATGCTAATGGGCAGCCTATTACCTTTGGACAAACACCAACATCGAATGGCGTGAAGAATCGTGCTAAGAAACAGGGTAAAAAAAGTGAAGCAGTGGACCTAAGGTCGCTTCTAATTAGCTGTTCACAATCGGTTGCTGCTGATGATCAAAGGACCGCAAATGAACAATTAAAGCAAATTAGGCAACATTGTTCTCCTTCCGGTGATTCATCTCAAAGGTTGGCGCATATATTTGCTAATGGTCTTGAGGCCCGTTTGGCCGGTACCGGAACCCAGATTTATGCAGCCCTCTCCGCCAAGCAAATCTCGGCCTCCGAGAAGTTGAAGGCATACCATGCTTATCTTTCGTCTTGCCCGTTCCGGAAAATATCAATTTTCTTTGCAGTTGGAACGATTATCGATATGTCTTTGAAAGCTTCAACTCTTCATATAGTTGATTTTGGTATCCAATACGGTTTCCAATGGCCGATCCTTATCCAGCATCTTGCGGACCGACCTGGTGGGCCACCCAAGCTTCGGATTACTGGAATAGAGCTTCCCCAACCCGGATTCAGGCCAGCGGAAAGGCTAGAGGAGACTGGCCGTCGTTTAGCGAACTATTGCGAGCGTTTTAGTGTTCCGTTTGAATACAACGCCATAGCCACACAAAAGTGGGAGACAATCAAAATTGCGGACTTGAAGATTAGGGAAAATGAGTTTGTTGCTGTAAATTGCTTGTTTCGGTTTAAAAATCTACTCGATGAGACGGTTGATTTGGACAGTCCAAGGGATGCTGTTCTGAAATTAATCAGGAAGATGAACCCGAATATTTTTGTCCATGCTGTTATTAATGGATCCCATAGTGCTCCCTTCTTTGTTACCCGTTTCCGTGAGGCACTCTTCCACTACTCGGCGTTCTTTGACGTGTTTGAGAATACTCTTGCCCATGACGACCATCAACGAACAAATTTGGAGAAAGCATTTTATGGGCGCGAGGTTATGAACATAATTGCGTGTGAGGGCCCAGCTAGAGTTGAGAGGCCTGAGACGTACAAGCAGTGGCAGGTTCGTAATATGAGGGCTGGTTTTAGGCCGGTTCCGTTAAACCAAAAGCTTATGAAGAAGTTCAAGTCCAAGGTGACTGCAGGGTACCATAAAGATTTCGTGTTCGATGAAGATGGTCAATGGATGTTACAGGGATGGAAGGGCCGGATTCTCTATGCTAGTTCTTGTTGGGTACCGGCA

Network for GWHGAAZE000739

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.15	GRAS	116	487	2.70E-114

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.621
	SRR3591706	second leaf	9.672
	SRR3591707	mature leaf	6.624
	SRR3591708	Shoot apex	18.207
	SRR3591709	Stem	103.178
	SRR3591710	White floral bud	5.155
	SRR3591711	White flower	8.237
	SRR3591712	Green floral bud	3.251
	SRR3591713	Yellow flower	6.448
SRP173429	SRR8316895	Juvenile bud stage	13.444
	SRR8316896	Juvenile bud stage	14.051
	SRR8316897	Juvenile bud stage	11.448
	SRR8316894	Third green stage	1.868
	SRR8316900	Third green stage	2.479
	SRR8316901	Third green stage	2.935
	SRR8316898	Complete white stage	0.152
	SRR8316899	Complete white stage	2.495
	SRR8316903	Complete white stage	0.666
	SRR8316902	Silver flowering stage	1.161
	SRR8316904	Silver flowering stage	1.166
	SRR8316905	Silver flowering stage	0.540
	SRR8316906	Gold flowering stage	8.181
	SRR8316907	Gold flowering stage	3.123
	SRR8316908	Gold flowering stage	18.549
SRP132670	SRR6706286	Control	2.503
	SRR6706287	Light intensity 50%	2.299
	SRR6706288	Light intensity 20%	2.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.543
	CNS0095593	Slightly white alabastrum(diploid) 2	2.941
	CNS0095594	Slightly white alabastrum(diploid) 3	7.726
	CNS0095595	Whole white alabastrum(diploid) 2	5.019
	CNS0095596	Whole white alabastrum(diploid) 3	2.833
	CNS0095597	Whole white alabastrum(diploid) 4	3.738
	CNS0095598	Silvery flower (diploied) 1	5.979
	CNS0095599	Silvery flower (diploied) 2	19.762
	CNS0095600	Silvery flower (diploied) 3	9.470
	CNS0095601	Golden flower (diploid) 1	50.779
	CNS0095602	Golden flower (diploid) 2	24.651
	CNS0095603	Golden flower (diploid) 3	21.475
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.356
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.171
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.773
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.639
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.421
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.541
	CNS0095610	Silvery flower (tetraploid) 1	1.392
	CNS0095611	Silvery flower (tetraploid) 2	0.497
	CNS0095612	Silvery flower (tetraploid) 3	1.469
	CNS0095613	Golden flower (tetraploid) 1	2.591
	CNS0095614	Golden flower (tetraploid) 2	3.218
	CNS0095615	Golden flower (tetraploid) 3	1.559
CRA001975	CRR073297	Stem 1	5.544
	CRR073298	Stem 2	5.383
	CRR073299	Stem 3	5.319
	CRR073300	Leaf 1	3.654
	CRR073301	Leaf 2	2.906
	CRR073302	Leaf 3	1.848
	CRR073303	Juvenile bud 1	1.681
	CRR073304	Juvenile bud 2	2.668
	CRR073305	Juvenile bud 3	1.284
	CRR073306	Third green 1	1.767
	CRR073307	Third green 2	1.479
	CRR073308	Third green 3	2.067
	CRR073309	Second white 1	2.082
	CRR073310	Second white 2	1.170
	CRR073311	Second white 3	3.728
	CRR073312	Silver flowering 1	4.217
	CRR073313	Silver flowering 2	6.803
	CRR073314	Silver flowering 3	6.108
	CRR073315	Gold flowering 1	14.843
	CRR073316	Gold flowering 2	14.491
	CRR073317	Gold flowering 3	20.625
	CRR073318	Tawny withering 1	43.659
	CRR073319	Tawny withering 2	67.915
	CRR073320	Tawny withering 3	43.009