Detail information of GWHGAAZE000753


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006424836.10hypothetical protein CICLE_v10028570mg [Citrus clementina]
Swissprottr|Q06548|APK1A_ARATH0Protein kinase APK1A, chloroplastic (Precursor)
trEMBLtr|V4SC26|V4SC26_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR38077.1}
TAIR10AT1G07570.29E-159Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1520211815204679-
GWHAAZE00000001mRNA1520211815204679-
GWHAAZE00000001exon1520211815202560-
GWHAAZE00000001exon1520336615203489-
GWHAAZE00000001exon1520359915203741-
GWHAAZE00000001exon1520385915203994-
GWHAAZE00000001exon1520424915204580-
GWHAAZE00000001exon1520467015204679-
GWHAAZE00000001CDS1520467015204679-
GWHAAZE00000001CDS1520424915204580-
GWHAAZE00000001CDS1520385915203994-
GWHAAZE00000001CDS1520359915203741-
GWHAAZE00000001CDS1520336615203489-
GWHAAZE00000001CDS1520211815202560-
Transcript Sequence

Network for GWHGAAZE000753

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr663447.80E-47
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE000753.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.541
SRR3591706second leaf8.776
SRR3591707mature leaf14.938
SRR3591708Shoot apex8.044
SRR3591709Stem7.398
SRR3591710White floral bud29.757
SRR3591711White flower60.948
SRR3591712Green floral bud50.207
SRR3591713Yellow flower41.125
SRP173429 SRR8316895Juvenile bud stage 18.044
SRR8316896Juvenile bud stage 27.758
SRR8316897Juvenile bud stage 19.168
SRR8316894Third green stage 11.994
SRR8316900Third green stage 29.105
SRR8316901Third green stage 34.150
SRR8316898Complete white stage 7.533
SRR8316899Complete white stage 85.987
SRR8316903Complete white stage 10.553
SRR8316902Silver flowering stage15.748
SRR8316904Silver flowering stage19.723
SRR8316905Silver flowering stage9.764
SRR8316906Gold flowering stage 36.541
SRR8316907Gold flowering stage 31.137
SRR8316908Gold flowering stage 47.419
SRP132670SRR6706286Control30.632
SRR6706287Light intensity 50%36.359
SRR6706288Light intensity 20%40.094
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.962
CNS0095593Slightly white alabastrum(diploid) 234.338
CNS0095594Slightly white alabastrum(diploid) 325.414
CNS0095595Whole white alabastrum(diploid) 226.398
CNS0095596Whole white alabastrum(diploid) 316.824
CNS0095597Whole white alabastrum(diploid) 429.314
CNS0095598Silvery flower (diploied) 137.029
CNS0095599Silvery flower (diploied) 225.193
CNS0095600Silvery flower (diploied) 335.324
CNS0095601Golden flower (diploid) 128.743
CNS0095602Golden flower (diploid) 246.530
CNS0095603Golden flower (diploid) 344.626
CNS0095604Slightly white alabastrum(tetraploid) 120.114
CNS0095605Slightly white alabastrum(tetraploid) 213.014
CNS0095606Slightly white alabastrum(tetraploid) 336.867
CNS0095607Whole white alabastrum(tetraploid) 110.518
CNS0095608Whole white alabastrum(tetraploid) 212.375
CNS0095609Whole white alabastrum(tetraploid) 331.899
CNS0095610Silvery flower (tetraploid) 136.680
CNS0095611Silvery flower (tetraploid) 232.019
CNS0095612Silvery flower (tetraploid) 352.000
CNS0095613Golden flower (tetraploid) 128.855
CNS0095614Golden flower (tetraploid) 248.219
CNS0095615Golden flower (tetraploid) 345.631
CRA001975CRR073297Stem 138.589
CRR073298Stem 237.682
CRR073299Stem 336.420
CRR073300Leaf 170.728
CRR073301Leaf 275.509
CRR073302Leaf 369.964
CRR073303Juvenile bud 174.388
CRR073304Juvenile bud 261.901
CRR073305Juvenile bud 388.679
CRR073306Third green 117.172
CRR073307Third green 218.759
CRR073308Third green 318.006
CRR073309Second white 146.640
CRR073310Second white 236.764
CRR073311Second white 335.881
CRR073312Silver flowering 166.213
CRR073313Silver flowering 282.096
CRR073314Silver flowering 351.872
CRR073315Gold flowering 124.545
CRR073316Gold flowering 227.917
CRR073317Gold flowering 340.136
CRR073318Tawny withering 127.725
CRR073319Tawny withering 226.865
CRR073320Tawny withering 324.406