Detail information of GWHGAAZE000765


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010043563.10PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Eucalyptus grandis]
Swissprottr|Q94B55|XB31_ARATH0Putative E3 ubiquitin-protein ligase XBAT31
trEMBLtr|A0A059D4B0|A0A059D4B0_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW85578.1}
TAIR10AT2G28840.12E-178XB3 ortholog 1 in Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1553465015538370-
GWHAAZE00000001mRNA1553465015538370-
GWHAAZE00000001exon1553810315538370-
GWHAAZE00000001exon1553782515537884-
GWHAAZE00000001exon1553751215537583-
GWHAAZE00000001exon1553702415537145-
GWHAAZE00000001exon1553679415536934-
GWHAAZE00000001exon1553647815536585-
GWHAAZE00000001exon1553603915536297-
GWHAAZE00000001exon1553465015535402-
GWHAAZE00000001five_prime_UTR1553828315538370-
GWHAAZE00000001CDS1553810315538282-
GWHAAZE00000001CDS1553782515537884-
GWHAAZE00000001CDS1553751215537583-
GWHAAZE00000001CDS1553702415537145-
GWHAAZE00000001CDS1553679415536934-
GWHAAZE00000001CDS1553647815536585-
GWHAAZE00000001CDS1553603915536297-
GWHAAZE00000001CDS1553501615535402-
GWHAAZE00000001three_prime_UTR1553465015535015-
Transcript Sequence

Network for GWHGAAZE000765

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.8Ank_2151098.20E-14
PF12796.8Ank_21121832.40E-10
PF13857.7Ank_51952345.30E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.855
SRR3591706second leaf14.712
SRR3591707mature leaf16.627
SRR3591708Shoot apex5.133
SRR3591709Stem70.199
SRR3591710White floral bud8.189
SRR3591711White flower12.754
SRR3591712Green floral bud18.219
SRR3591713Yellow flower7.376
SRP173429 SRR8316895Juvenile bud stage 2.627
SRR8316896Juvenile bud stage 3.730
SRR8316897Juvenile bud stage 1.731
SRR8316894Third green stage 2.565
SRR8316900Third green stage 6.884
SRR8316901Third green stage 7.928
SRR8316898Complete white stage 2.929
SRR8316899Complete white stage 20.873
SRR8316903Complete white stage 4.202
SRR8316902Silver flowering stage2.082
SRR8316904Silver flowering stage3.153
SRR8316905Silver flowering stage1.456
SRR8316906Gold flowering stage 6.652
SRR8316907Gold flowering stage 5.711
SRR8316908Gold flowering stage 11.151
SRP132670SRR6706286Control6.977
SRR6706287Light intensity 50%8.100
SRR6706288Light intensity 20%9.711
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.034
CNS0095593Slightly white alabastrum(diploid) 26.865
CNS0095594Slightly white alabastrum(diploid) 34.750
CNS0095595Whole white alabastrum(diploid) 25.937
CNS0095596Whole white alabastrum(diploid) 34.724
CNS0095597Whole white alabastrum(diploid) 46.697
CNS0095598Silvery flower (diploied) 114.719
CNS0095599Silvery flower (diploied) 27.156
CNS0095600Silvery flower (diploied) 36.861
CNS0095601Golden flower (diploid) 15.049
CNS0095602Golden flower (diploid) 25.972
CNS0095603Golden flower (diploid) 38.003
CNS0095604Slightly white alabastrum(tetraploid) 16.261
CNS0095605Slightly white alabastrum(tetraploid) 24.779
CNS0095606Slightly white alabastrum(tetraploid) 310.918
CNS0095607Whole white alabastrum(tetraploid) 15.301
CNS0095608Whole white alabastrum(tetraploid) 25.556
CNS0095609Whole white alabastrum(tetraploid) 37.278
CNS0095610Silvery flower (tetraploid) 110.323
CNS0095611Silvery flower (tetraploid) 211.413
CNS0095612Silvery flower (tetraploid) 314.045
CNS0095613Golden flower (tetraploid) 16.164
CNS0095614Golden flower (tetraploid) 28.383
CNS0095615Golden flower (tetraploid) 34.497
CRA001975CRR073297Stem 15.051
CRR073298Stem 24.767
CRR073299Stem 33.420
CRR073300Leaf 17.820
CRR073301Leaf 29.023
CRR073302Leaf 35.452
CRR073303Juvenile bud 17.769
CRR073304Juvenile bud 25.240
CRR073305Juvenile bud 39.184
CRR073306Third green 12.277
CRR073307Third green 22.094
CRR073308Third green 32.493
CRR073309Second white 13.547
CRR073310Second white 22.620
CRR073311Second white 32.612
CRR073312Silver flowering 15.431
CRR073313Silver flowering 27.321
CRR073314Silver flowering 35.304
CRR073315Gold flowering 120.025
CRR073316Gold flowering 219.593
CRR073317Gold flowering 318.343
CRR073318Tawny withering 154.680
CRR073319Tawny withering 265.082
CRR073320Tawny withering 360.877