Gene detail

Detail information of GWHGAAZE000766

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270073.1	1.3522E-170	PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]
Swissprot	tr\|Q9LD90\|CBF5_ARATH	5E-156	H/ACA ribonucleoprotein complex subunit 4
trEMBL	tr\|F6HLD3\|F6HLD3_VITVI	5E-171	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55597.1}
TAIR10	AT3G57150.1	9E-125	homologue of NAP57

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	15555162	15556019	-
GWHAAZE00000001	mRNA	15555162	15556019	-
GWHAAZE00000001	exon	15555162	15556019	-
GWHAAZE00000001	CDS	15555162	15556019	-

Transcript Sequence
>GWHTAAZE000768 ATGGAGCTCAATCATTCAGAAAAGAAGAAAAAGAAAACCAAATCCAAATCCCAAGAACAAGAACAAGAAAAACCCACAATCACCCCATCAGAATCAGACCGAACCCAGATCACGGATTACCTAATAAAACCCCAATCGTTCACTCCTTCAATCGACACTTCTCAATGGCCGATCCTCCTCAAGAACTACGATCGCCTCAATGTACGAACCGGACACTATACTCCTCTTCCCTCCGGTTACTCCCCCCTCAAACGCCCTTTAGCTGAATATATAAGGTATGGTGTTCTAAATCTTGATAAACCAGCTAACCCCTCTTCACATGAAGTTGTTGCTTGGATTAAACGTATTCTGCGTGTTGAAAAAACTGGTCATAGTGGAACCCTAGATCCGAAAGTTACTGGGAATTTAATTGTTTGCATTGATAGAGCTACCCGTTTAGTTAAATCTCAGCAGGGTGCTGGTAAAGAGTATGTTTGTGTTGCCCGGTTACATTCGGGTGTACCCGATGTGGCTAAAGTGGCTCGGGCACTTGAGACATTGACTGGGGCCGTGTTTCAAAGGCCGCCTTTGATTTCGGCCGTTAAGAGGCAGCTTAGGATTAGGACTATTTATGAGAGTAAAATGTTGGAATATGATGCTGATAAGCACTTGGTTGTGTTTTGGATTTCTTGCGAGGCTGGTACTTATGTGAGGACGCTTTGCGTTCATTTGGGGTTGATTCTTGGTGTTGGCGGGCATATGCAAGAATTGAGAAGGGTTAGGTCTGGGATCATGGGTGAGAAAGATAATATGGTGACGATGCATGATGTGATGGATGCACAATGGGTTTTGATAATAATCGTGATGAGAGTTATTTGA

Network for GWHGAAZE000766

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08068.13	DKCLD	53	110	1.20E-31
PF01509.19	TruB_N	114	165	1.50E-15
PF16198.6	TruB_C_2	231	275	1.80E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11131	DKC1, NOLA4, CBF5	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0001522	biological_process	pseudouridine synthesis
GO:0009451	biological_process	RNA modification
GO:0003723	molecular_function	RNA binding
GO:0009982	molecular_function	pseudouridine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.156
	SRR3591706	second leaf	3.328
	SRR3591707	mature leaf	3.400
	SRR3591708	Shoot apex	14.804
	SRR3591709	Stem	6.969
	SRR3591710	White floral bud	6.265
	SRR3591711	White flower	14.356
	SRR3591712	Green floral bud	16.529
	SRR3591713	Yellow flower	5.889
SRP173429	SRR8316895	Juvenile bud stage	9.731
	SRR8316896	Juvenile bud stage	12.203
	SRR8316897	Juvenile bud stage	5.564
	SRR8316894	Third green stage	6.134
	SRR8316900	Third green stage	15.934
	SRR8316901	Third green stage	15.391
	SRR8316898	Complete white stage	1.555
	SRR8316899	Complete white stage	15.646
	SRR8316903	Complete white stage	2.953
	SRR8316902	Silver flowering stage	2.258
	SRR8316904	Silver flowering stage	3.865
	SRR8316905	Silver flowering stage	1.632
	SRR8316906	Gold flowering stage	4.402
	SRR8316907	Gold flowering stage	2.486
	SRR8316908	Gold flowering stage	5.745
SRP132670	SRR6706286	Control	29.983
	SRR6706287	Light intensity 50%	29.409
	SRR6706288	Light intensity 20%	31.457
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.013
	CNS0095593	Slightly white alabastrum(diploid) 2	13.533
	CNS0095594	Slightly white alabastrum(diploid) 3	13.268
	CNS0095595	Whole white alabastrum(diploid) 2	7.865
	CNS0095596	Whole white alabastrum(diploid) 3	10.054
	CNS0095597	Whole white alabastrum(diploid) 4	9.306
	CNS0095598	Silvery flower (diploied) 1	13.058
	CNS0095599	Silvery flower (diploied) 2	7.178
	CNS0095600	Silvery flower (diploied) 3	7.632
	CNS0095601	Golden flower (diploid) 1	6.919
	CNS0095602	Golden flower (diploid) 2	8.776
	CNS0095603	Golden flower (diploid) 3	8.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.249
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.697
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.090
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.058
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.031
	CNS0095610	Silvery flower (tetraploid) 1	10.486
	CNS0095611	Silvery flower (tetraploid) 2	11.951
	CNS0095612	Silvery flower (tetraploid) 3	5.073
	CNS0095613	Golden flower (tetraploid) 1	2.745
	CNS0095614	Golden flower (tetraploid) 2	6.275
	CNS0095615	Golden flower (tetraploid) 3	1.935
CRA001975	CRR073297	Stem 1	35.738
	CRR073298	Stem 2	33.081
	CRR073299	Stem 3	34.482
	CRR073300	Leaf 1	34.062
	CRR073301	Leaf 2	37.306
	CRR073302	Leaf 3	31.074
	CRR073303	Juvenile bud 1	30.118
	CRR073304	Juvenile bud 2	14.044
	CRR073305	Juvenile bud 3	35.545
	CRR073306	Third green 1	0.493
	CRR073307	Third green 2	0.782
	CRR073308	Third green 3	2.408
	CRR073309	Second white 1	4.389
	CRR073310	Second white 2	3.694
	CRR073311	Second white 3	2.009
	CRR073312	Silver flowering 1	1.612
	CRR073313	Silver flowering 2	2.555
	CRR073314	Silver flowering 3	1.996
	CRR073315	Gold flowering 1	12.444
	CRR073316	Gold flowering 2	20.666
	CRR073317	Gold flowering 3	9.511
	CRR073318	Tawny withering 1	24.087
	CRR073319	Tawny withering 2	21.028
	CRR073320	Tawny withering 3	34.864