Gene detail

Detail information of GWHGAAZE000771

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009795620.1	0	PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris]
Swissprot	tr\|Q8LBP4\|ALB3_ARATH	0	Inner membrane protein ALBINO3, chloroplastic (Precursor)
trEMBL	tr\|K4D9M0\|K4D9M0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g066110.1.1}
TAIR10	AT2G28800.1	2E-156	63 kDa inner membrane family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	15624201	15631459	+
GWHAAZE00000001	mRNA	15624201	15631459	+
GWHAAZE00000001	exon	15624201	15624533	+
GWHAAZE00000001	exon	15626387	15626497	+
GWHAAZE00000001	exon	15626746	15626820	+
GWHAAZE00000001	exon	15627550	15627610	+
GWHAAZE00000001	exon	15628032	15628105	+
GWHAAZE00000001	exon	15628207	15628311	+
GWHAAZE00000001	exon	15628822	15628929	+
GWHAAZE00000001	exon	15629843	15629946	+
GWHAAZE00000001	exon	15630923	15631072	+
GWHAAZE00000001	exon	15631154	15631274	+
GWHAAZE00000001	exon	15631451	15631459	+
GWHAAZE00000001	CDS	15624201	15624533	+
GWHAAZE00000001	CDS	15626387	15626497	+
GWHAAZE00000001	CDS	15626746	15626820	+
GWHAAZE00000001	CDS	15627550	15627610	+
GWHAAZE00000001	CDS	15628032	15628105	+
GWHAAZE00000001	CDS	15628207	15628311	+
GWHAAZE00000001	CDS	15628822	15628929	+
GWHAAZE00000001	CDS	15629843	15629946	+
GWHAAZE00000001	CDS	15630923	15631072	+
GWHAAZE00000001	CDS	15631154	15631274	+
GWHAAZE00000001	CDS	15631451	15631459	+

Transcript Sequence
>GWHTAAZE000773 ATGGCGAGAACTCTAATTTCATCACCATCTTTTCTCGGCACCCCCATCCCTTCCCTCTCTCGCCATGGCTTCCACCATCTCCCACACCGTAGACTCATTACCACCAAGGTCAAATTCACCCTCAACGACCTCCCTCCGATTCACTCCTTTGATAATTCGTTCGATTTGAGCGCTATTGTTAACCGGACTGAGAGTCTACTTTACACGCTCGCCGATGCAGCTACAGTTGCCGTTGATTCCGCAGGTGCAGCCTCTGGCTCCGCTGATTCTACTGTCCAGAAGAGCGGAGGTTGGTTTGGTTTTATCTCCGACGCCATGGAAGTCGTATTGAAGGTGTTGAAGGATGGACTATCAACTGTGCACGTGCCTTATGCTTACGGATTTGCAATTATATTGCTAACTGTTATTGTTAAAGCTATAACATACCCTTTGACAAAGCAACAGGTGGAGTCAACATTGGCTATGCAAAACCTGCAACCTAAGATCAAAGCAATTCAAGCAAGATATGCAGGAAATCAGGAAAGAATACAACTTGAGACATCACGGCTATACAAACAGGCAGGGGTTAACCCTTTGGCGGGATGTCTCCCGACTTTGGCTACAATACCAGTCTGGATAGGTTTGTACCAAGCTCTTTCAAATGTGGCTAATGAGGGACTACTGACGGAAGGTTTCTTTTGGATTCCCTCATTGGGAGGCCCAACTTCAATTGCTGCTCGACAAAGTGGATCCGGAATTTCTTGGCTCTTTCCATTTGTGGATGGTCATCCACCACTAGGTTGGCACGACACTGCTGCTTACCTTGTTTTACCTGTCCTCCTAGTTGTTTCTCAGTTTGTTTCAATGGAGCTTATGAAACCTCCTCAAACTGACGATCCGGCTCAGAAGAACACGCTTCTTGTTTTCAAGTTTCTTCCTCTCATGATTGGTTACTTCTCCTTGTCTGTTCCATCCGGATTGTCGATTTATTGGTTCACAAACAACGTGCTGAGCACAGCGCAACAAGTATGGTTACGCAAAGGGGGTGGTGCATCACCTGCTGTAAGTGAGAATGCAAATGGCATCATCAGTGCCGGACGTGCAAAACGATTAGGTTCTGAGCCAGGGCAATCTGGTGATAGGTTTAGGAAGTTAAAAGAAGAAGAGAAGAAGAACAAATCGAGCAAGGCATTGCCTACAGATGTGGTTGATATTTCAGCCTCTGTATCAGATTCTGAAGACAACTCGAATGAGGGTACTGAGACTGCCTAA

Network for GWHGAAZE000771

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02096.21	60KD_IMP	126	340	2.90E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03217	yidC, spoIIIJ, OXA1, ccfA	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0032977	molecular_function	membrane insertase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	89.152
	SRR3591706	second leaf	278.722
	SRR3591707	mature leaf	317.341
	SRR3591708	Shoot apex	129.199
	SRR3591709	Stem	60.056
	SRR3591710	White floral bud	249.080
	SRR3591711	White flower	382.268
	SRR3591712	Green floral bud	108.671
	SRR3591713	Yellow flower	545.210
SRP173429	SRR8316895	Juvenile bud stage	60.402
	SRR8316896	Juvenile bud stage	68.371
	SRR8316897	Juvenile bud stage	33.121
	SRR8316894	Third green stage	22.836
	SRR8316900	Third green stage	96.242
	SRR8316901	Third green stage	87.728
	SRR8316898	Complete white stage	92.242
	SRR8316899	Complete white stage	107.207
	SRR8316903	Complete white stage	159.634
	SRR8316902	Silver flowering stage	115.789
	SRR8316904	Silver flowering stage	148.996
	SRR8316905	Silver flowering stage	87.478
	SRR8316906	Gold flowering stage	266.527
	SRR8316907	Gold flowering stage	234.059
	SRR8316908	Gold flowering stage	239.051
SRP132670	SRR6706286	Control	101.417
	SRR6706287	Light intensity 50%	105.298
	SRR6706288	Light intensity 20%	110.918
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.952
	CNS0095593	Slightly white alabastrum(diploid) 2	24.594
	CNS0095594	Slightly white alabastrum(diploid) 3	32.478
	CNS0095595	Whole white alabastrum(diploid) 2	37.410
	CNS0095596	Whole white alabastrum(diploid) 3	40.260
	CNS0095597	Whole white alabastrum(diploid) 4	34.386
	CNS0095598	Silvery flower (diploied) 1	90.063
	CNS0095599	Silvery flower (diploied) 2	103.200
	CNS0095600	Silvery flower (diploied) 3	320.269
	CNS0095601	Golden flower (diploid) 1	121.922
	CNS0095602	Golden flower (diploid) 2	272.212
	CNS0095603	Golden flower (diploid) 3	256.878
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.076
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.574
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.290
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.981
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.855
	CNS0095609	Whole white alabastrum(tetraploid) 3	91.194
	CNS0095610	Silvery flower (tetraploid) 1	356.703
	CNS0095611	Silvery flower (tetraploid) 2	432.098
	CNS0095612	Silvery flower (tetraploid) 3	354.644
	CNS0095613	Golden flower (tetraploid) 1	269.323
	CNS0095614	Golden flower (tetraploid) 2	329.860
	CNS0095615	Golden flower (tetraploid) 3	495.028
CRA001975	CRR073297	Stem 1	103.714
	CRR073298	Stem 2	89.821
	CRR073299	Stem 3	100.996
	CRR073300	Leaf 1	112.794
	CRR073301	Leaf 2	110.700
	CRR073302	Leaf 3	112.165
	CRR073303	Juvenile bud 1	123.264
	CRR073304	Juvenile bud 2	195.319
	CRR073305	Juvenile bud 3	122.532
	CRR073306	Third green 1	190.024
	CRR073307	Third green 2	109.628
	CRR073308	Third green 3	131.239
	CRR073309	Second white 1	284.967
	CRR073310	Second white 2	329.779
	CRR073311	Second white 3	308.595
	CRR073312	Silver flowering 1	338.370
	CRR073313	Silver flowering 2	344.564
	CRR073314	Silver flowering 3	384.884
	CRR073315	Gold flowering 1	403.394
	CRR073316	Gold flowering 2	551.852
	CRR073317	Gold flowering 3	337.047
	CRR073318	Tawny withering 1	60.966
	CRR073319	Tawny withering 2	57.968
	CRR073320	Tawny withering 3	55.203