Detail information of GWHGAAZE000772


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010922367.11.5309E-106PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X1 [Elaeis guineensis]
Swissprottr|Q42541|UBC13_ARATH6E-94Ubiquitin-conjugating enzyme E2 13
trEMBLtr|A0A068UKN1|A0A068UKN1_COFCA3E-105Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313|EMBL:CDP09031.1}
TAIR10AT3G46460.16E-67ubiquitin-conjugating enzyme 13

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1565093815656743+
GWHAAZE00000001mRNA1565093815656743+
GWHAAZE00000001exon1565093815650977+
GWHAAZE00000001exon1565110215651204+
GWHAAZE00000001exon1565205715652154+
GWHAAZE00000001exon1565250115652601+
GWHAAZE00000001exon1565648415656561+
GWHAAZE00000001exon1565666615656743+
GWHAAZE00000001CDS1565093815650977+
GWHAAZE00000001CDS1565110215651204+
GWHAAZE00000001CDS1565205715652154+
GWHAAZE00000001CDS1565250115652601+
GWHAAZE00000001CDS1565648415656561+
GWHAAZE00000001CDS1565666615656743+
Transcript Sequence

Network for GWHGAAZE000772

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con81575.80E-51
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10575UBE2G1, UBC7 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf117.737
SRR3591706second leaf72.539
SRR3591707mature leaf57.118
SRR3591708Shoot apex79.342
SRR3591709Stem152.515
SRR3591710White floral bud157.199
SRR3591711White flower189.360
SRR3591712Green floral bud121.310
SRR3591713Yellow flower256.091
SRP173429 SRR8316895Juvenile bud stage 54.603
SRR8316896Juvenile bud stage 82.187
SRR8316897Juvenile bud stage 41.646
SRR8316894Third green stage 35.459
SRR8316900Third green stage 104.166
SRR8316901Third green stage 105.870
SRR8316898Complete white stage 99.823
SRR8316899Complete white stage 185.805
SRR8316903Complete white stage 130.701
SRR8316902Silver flowering stage104.691
SRR8316904Silver flowering stage133.951
SRR8316905Silver flowering stage79.360
SRR8316906Gold flowering stage 219.468
SRR8316907Gold flowering stage 242.833
SRR8316908Gold flowering stage 177.773
SRP132670SRR6706286Control116.724
SRR6706287Light intensity 50%114.532
SRR6706288Light intensity 20%118.641
CNP0000432CNS0095592Slightly white alabastrum(diploid) 156.924
CNS0095593Slightly white alabastrum(diploid) 279.617
CNS0095594Slightly white alabastrum(diploid) 374.057
CNS0095595Whole white alabastrum(diploid) 261.227
CNS0095596Whole white alabastrum(diploid) 362.441
CNS0095597Whole white alabastrum(diploid) 473.126
CNS0095598Silvery flower (diploied) 1126.382
CNS0095599Silvery flower (diploied) 2110.598
CNS0095600Silvery flower (diploied) 3251.403
CNS0095601Golden flower (diploid) 1113.535
CNS0095602Golden flower (diploid) 2262.816
CNS0095603Golden flower (diploid) 3254.670
CNS0095604Slightly white alabastrum(tetraploid) 175.466
CNS0095605Slightly white alabastrum(tetraploid) 267.302
CNS0095606Slightly white alabastrum(tetraploid) 3133.619
CNS0095607Whole white alabastrum(tetraploid) 158.800
CNS0095608Whole white alabastrum(tetraploid) 267.222
CNS0095609Whole white alabastrum(tetraploid) 398.581
CNS0095610Silvery flower (tetraploid) 1207.553
CNS0095611Silvery flower (tetraploid) 2219.698
CNS0095612Silvery flower (tetraploid) 3224.735
CNS0095613Golden flower (tetraploid) 1234.698
CNS0095614Golden flower (tetraploid) 2214.039
CNS0095615Golden flower (tetraploid) 3241.607
CRA001975CRR073297Stem 166.419
CRR073298Stem 263.989
CRR073299Stem 383.085
CRR073300Leaf 182.808
CRR073301Leaf 279.554
CRR073302Leaf 385.973
CRR073303Juvenile bud 197.618
CRR073304Juvenile bud 2116.504
CRR073305Juvenile bud 396.554
CRR073306Third green 1110.430
CRR073307Third green 2138.013
CRR073308Third green 3104.871
CRR073309Second white 1195.951
CRR073310Second white 2120.129
CRR073311Second white 3112.834
CRR073312Silver flowering 1150.129
CRR073313Silver flowering 2142.853
CRR073314Silver flowering 3134.315
CRR073315Gold flowering 122.767
CRR073316Gold flowering 220.925
CRR073317Gold flowering 331.359
CRR073318Tawny withering 154.892
CRR073319Tawny withering 257.272
CRR073320Tawny withering 370.626