Gene detail

Detail information of GWHGAAZE000776

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002528436.1	dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
Swissprot	tr\|Q9SN95\|UXS5_ARATH	UDP-glucuronic acid decarboxylase 5
trEMBL	tr\|B9SR17\|B9SR17_RICCO	Dtdp-glucose 4-6-dehydratase, putative {ECO:0000313\|EMBL:EEF33919.1}
TAIR10	AT3G46440.2	UDP-XYL synthase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	15710926	15714854	+
GWHAAZE00000001	mRNA	15710926	15714854	+
GWHAAZE00000001	exon	15710926	15711012	+
GWHAAZE00000001	exon	15711775	15711861	+
GWHAAZE00000001	exon	15712016	15712103	+
GWHAAZE00000001	exon	15712368	15712459	+
GWHAAZE00000001	exon	15712862	15712926	+
GWHAAZE00000001	exon	15713031	15713119	+
GWHAAZE00000001	exon	15713266	15713343	+
GWHAAZE00000001	exon	15713429	15713522	+
GWHAAZE00000001	exon	15713738	15713804	+
GWHAAZE00000001	exon	15713917	15713980	+
GWHAAZE00000001	exon	15714097	15714137	+
GWHAAZE00000001	exon	15714669	15714854	+
GWHAAZE00000001	CDS	15710926	15711012	+
GWHAAZE00000001	CDS	15711775	15711861	+
GWHAAZE00000001	CDS	15712016	15712103	+
GWHAAZE00000001	CDS	15712368	15712459	+
GWHAAZE00000001	CDS	15712862	15712926	+
GWHAAZE00000001	CDS	15713031	15713119	+
GWHAAZE00000001	CDS	15713266	15713343	+
GWHAAZE00000001	CDS	15713429	15713522	+
GWHAAZE00000001	CDS	15713738	15713804	+
GWHAAZE00000001	CDS	15713917	15713980	+
GWHAAZE00000001	CDS	15714097	15714137	+
GWHAAZE00000001	CDS	15714669	15714854	+

Transcript Sequence
>GWHTAAZE000778 ATGGAAAAGAGGCCTTCAAATGGGGATCAACAAACAACTAAGCCTCCCCCAACCCCATCTCCTTTGCGTTTCTCTAAATTCTTTCAGTCCAATATGAGAATTTTGATCACTGGAGGTGCTGGATTCATTGGCTCTCACCTAGTGGACAGGTTGATGGAAAATGAGAAGAATGAGGTAATCGTGGCGGATAATTACTTCACTGGCTCAAAGGACAATCTTAAGAAATGGATAGGTCATCCAAGATTTGAGCTTATTCGTCATGATGTCACTGAACCATTGTTGGTTGAGGTTGATCAGATATACCATCTTGCATGCCCTGCTTCTCCGATTTTCTATAAACACAACCCTGTGAAGACGATAAAGACAAATGTTATTGGCACACTGAATATGCTGGGACTTGCCAAGCGAGTTGGAGCAAGGATTTTGCTTACATCAACCTCAGAGGTATACGGTGATCCCCTTGTGCATCCCCAGCCAGAGACCTACTGGGGTAACGTGAACCCAATCGGAGTTAGGAGTTGCTATGACGAGGGAAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGCATTGAAATAAGAATTGCTAGAATCTTCAACACCTATGGACCCCGCATGAATATTGATGATGGCCGCGTTGTGAGCAATTTCATAGCTCAAGCACTTCGTGAAGAGCCATTGACGGTTCAGGCCCCTGGAACGCAGACTCGCAGTTTCTGTTACGTCTCTGACATGGTTGATGGCCTCATTCGACTCATGGAAGGGGAGAACACGGGGCCTATCAACATTGGAAACCCAGGTGAATTTACTATGCTTGAACTTGCCGAGACGGTGAAGGAGCTTATTAATCCGAAGGTGGAGATAAAAATGGTGGAGAACACTCCCGATGATCCACGACAAAGGAAACCTGACATCACAAAGGCAAAGGAATTGCTTGGGTGGGAGCCGAAAATCAAGTTGCGAGATGGCCTTCCTCTCATGGAGGAAGATTTCCGACTCAGACTCACAGTTCCCAAGAAGAAATGA

Network for GWHGAAZE000776

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	35	329	1.80E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08678	UXS1, uxs	Metabolic pathways	map01100
K08678	UXS1, uxs	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	675.989
	SRR3591706	second leaf	64.176
	SRR3591707	mature leaf	43.380
	SRR3591708	Shoot apex	102.665
	SRR3591709	Stem	425.297
	SRR3591710	White floral bud	157.536
	SRR3591711	White flower	237.147
	SRR3591712	Green floral bud	122.096
	SRR3591713	Yellow flower	235.825
SRP173429	SRR8316895	Juvenile bud stage	126.775
	SRR8316896	Juvenile bud stage	143.159
	SRR8316897	Juvenile bud stage	85.249
	SRR8316894	Third green stage	47.862
	SRR8316900	Third green stage	177.555
	SRR8316901	Third green stage	157.797
	SRR8316898	Complete white stage	129.146
	SRR8316899	Complete white stage	213.536
	SRR8316903	Complete white stage	134.580
	SRR8316902	Silver flowering stage	137.410
	SRR8316904	Silver flowering stage	166.525
	SRR8316905	Silver flowering stage	95.973
	SRR8316906	Gold flowering stage	226.790
	SRR8316907	Gold flowering stage	290.615
	SRR8316908	Gold flowering stage	242.108
SRP132670	SRR6706286	Control	154.808
	SRR6706287	Light intensity 50%	147.285
	SRR6706288	Light intensity 20%	156.587
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	109.577
	CNS0095593	Slightly white alabastrum(diploid) 2	114.142
	CNS0095594	Slightly white alabastrum(diploid) 3	109.125
	CNS0095595	Whole white alabastrum(diploid) 2	95.327
	CNS0095596	Whole white alabastrum(diploid) 3	113.404
	CNS0095597	Whole white alabastrum(diploid) 4	87.780
	CNS0095598	Silvery flower (diploied) 1	108.488
	CNS0095599	Silvery flower (diploied) 2	115.646
	CNS0095600	Silvery flower (diploied) 3	227.990
	CNS0095601	Golden flower (diploid) 1	112.848
	CNS0095602	Golden flower (diploid) 2	194.519
	CNS0095603	Golden flower (diploid) 3	185.028
	CNS0095604	Slightly white alabastrum(tetraploid) 1	82.263
	CNS0095605	Slightly white alabastrum(tetraploid) 2	70.930
	CNS0095606	Slightly white alabastrum(tetraploid) 3	156.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.288
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.193
	CNS0095609	Whole white alabastrum(tetraploid) 3	127.423
	CNS0095610	Silvery flower (tetraploid) 1	230.477
	CNS0095611	Silvery flower (tetraploid) 2	236.900
	CNS0095612	Silvery flower (tetraploid) 3	188.903
	CNS0095613	Golden flower (tetraploid) 1	116.016
	CNS0095614	Golden flower (tetraploid) 2	159.196
	CNS0095615	Golden flower (tetraploid) 3	143.946
CRA001975	CRR073297	Stem 1	245.881
	CRR073298	Stem 2	187.866
	CRR073299	Stem 3	203.383
	CRR073300	Leaf 1	187.429
	CRR073301	Leaf 2	190.669
	CRR073302	Leaf 3	220.249
	CRR073303	Juvenile bud 1	264.488
	CRR073304	Juvenile bud 2	267.647
	CRR073305	Juvenile bud 3	259.658
	CRR073306	Third green 1	227.226
	CRR073307	Third green 2	177.889
	CRR073308	Third green 3	183.476
	CRR073309	Second white 1	340.609
	CRR073310	Second white 2	175.613
	CRR073311	Second white 3	132.494
	CRR073312	Silver flowering 1	144.673
	CRR073313	Silver flowering 2	168.184
	CRR073314	Silver flowering 3	122.659
	CRR073315	Gold flowering 1	57.774
	CRR073316	Gold flowering 2	63.756
	CRR073317	Gold flowering 3	56.542
	CRR073318	Tawny withering 1	363.730
	CRR073319	Tawny withering 2	238.726
	CRR073320	Tawny withering 3	521.872