Detail information of GWHGAAZE000780


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009419951.13.86479E-80PREDICTED: histone H2A-like [Musa acuminata subsp. malaccensis]
Swissprottr|P19177|H2A_PETCR3E-82Histone H2A
trEMBLtr|A0A022QLV9|A0A022QLV9_ERYGU3E-84Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIR10AT5G02560.12E-47histone H2A 12

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1577226715773425+
GWHAAZE00000001mRNA1577226715773425+
GWHAAZE00000001exon1577226715772473+
GWHAAZE00000001exon1577318315773425+
GWHAAZE00000001CDS1577226715772473+
GWHAAZE00000001CDS1577318315773425+
Transcript Sequence

Network for GWHGAAZE000780

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.25Histone19963.40E-12
PF16211.6Histone_H2A_C991335.90E-19
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE000780.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30100200300400500600700800900100011001200130014001…1500Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf315.781
SRR3591706second leaf161.100
SRR3591707mature leaf43.601
SRR3591708Shoot apex1353.616
SRR3591709Stem137.596
SRR3591710White floral bud88.776
SRR3591711White flower46.199
SRR3591712Green floral bud102.561
SRR3591713Yellow flower48.009
SRP173429 SRR8316895Juvenile bud stage 91.224
SRR8316896Juvenile bud stage 95.608
SRR8316897Juvenile bud stage 36.518
SRR8316894Third green stage 30.428
SRR8316900Third green stage 71.888
SRR8316901Third green stage 72.811
SRR8316898Complete white stage 26.635
SRR8316899Complete white stage 98.999
SRR8316903Complete white stage 50.491
SRR8316902Silver flowering stage18.845
SRR8316904Silver flowering stage18.846
SRR8316905Silver flowering stage13.367
SRR8316906Gold flowering stage 51.229
SRR8316907Gold flowering stage 51.832
SRR8316908Gold flowering stage 53.924
SRP132670SRR6706286Control67.978
SRR6706287Light intensity 50%70.602
SRR6706288Light intensity 20%84.900
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1155.965
CNS0095593Slightly white alabastrum(diploid) 2131.977
CNS0095594Slightly white alabastrum(diploid) 3106.511
CNS0095595Whole white alabastrum(diploid) 258.291
CNS0095596Whole white alabastrum(diploid) 368.984
CNS0095597Whole white alabastrum(diploid) 445.621
CNS0095598Silvery flower (diploied) 153.215
CNS0095599Silvery flower (diploied) 260.012
CNS0095600Silvery flower (diploied) 348.985
CNS0095601Golden flower (diploid) 143.316
CNS0095602Golden flower (diploid) 250.546
CNS0095603Golden flower (diploid) 344.960
CNS0095604Slightly white alabastrum(tetraploid) 1126.813
CNS0095605Slightly white alabastrum(tetraploid) 2115.361
CNS0095606Slightly white alabastrum(tetraploid) 3218.009
CNS0095607Whole white alabastrum(tetraploid) 150.786
CNS0095608Whole white alabastrum(tetraploid) 239.404
CNS0095609Whole white alabastrum(tetraploid) 378.173
CNS0095610Silvery flower (tetraploid) 140.842
CNS0095611Silvery flower (tetraploid) 237.464
CNS0095612Silvery flower (tetraploid) 338.141
CNS0095613Golden flower (tetraploid) 145.138
CNS0095614Golden flower (tetraploid) 246.257
CNS0095615Golden flower (tetraploid) 341.919
CRA001975CRR073297Stem 1202.354
CRR073298Stem 2176.804
CRR073299Stem 3361.876
CRR073300Leaf 178.671
CRR073301Leaf 277.841
CRR073302Leaf 3110.051
CRR073303Juvenile bud 182.964
CRR073304Juvenile bud 286.980
CRR073305Juvenile bud 363.189
CRR073306Third green 149.401
CRR073307Third green 249.712
CRR073308Third green 347.694
CRR073309Second white 147.209
CRR073310Second white 228.757
CRR073311Second white 334.820
CRR073312Silver flowering 146.789
CRR073313Silver flowering 247.836
CRR073314Silver flowering 334.022
CRR073315Gold flowering 168.553
CRR073316Gold flowering 248.734
CRR073317Gold flowering 364.111
CRR073318Tawny withering 1306.555
CRR073319Tawny withering 2227.144
CRR073320Tawny withering 3332.075