Gene detail

Detail information of GWHGAAZE000781

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009598240.1	1.5515E-135	PREDICTED: ras-related protein RABE1c-like [Nicotiana tomentosiformis]
Swissprot	tr\|P28186\|RAE1C_ARATH	8E-132	Ras-related protein RABE1c
trEMBL	tr\|I1Y996\|I1Y996_NICBE	1E-135	RabE1 {ECO:0000313\|EMBL:AFI98561.1}
TAIR10	AT5G59840.1	1E-91	Ras-related small GTP-binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	15820409	15823371	+
GWHAAZE00000001	mRNA	15820409	15823371	+
GWHAAZE00000001	exon	15820409	15820518	+
GWHAAZE00000001	exon	15821076	15821176	+
GWHAAZE00000001	exon	15822246	15822311	+
GWHAAZE00000001	exon	15822492	15822589	+
GWHAAZE00000001	exon	15822691	15822753	+
GWHAAZE00000001	exon	15822841	15822933	+
GWHAAZE00000001	exon	15823026	15823371	+
GWHAAZE00000001	CDS	15820409	15820518	+
GWHAAZE00000001	CDS	15821076	15821176	+
GWHAAZE00000001	CDS	15822246	15822311	+
GWHAAZE00000001	CDS	15822492	15822589	+
GWHAAZE00000001	CDS	15822691	15822753	+
GWHAAZE00000001	CDS	15822841	15822933	+
GWHAAZE00000001	CDS	15823026	15823112	+
GWHAAZE00000001	three_prime_UTR	15823113	15823371	+

Transcript Sequence
>GWHTAAZE000783 ATGTATTTATATGTTGTATATTATTTACCTTTTGCAGGTGTTGGCAAGAGTTGTCTTCTTTTGCGTTTCTCTGATGGTTCCTTCACCACTAGTTTTATCACTACAATTGGCATTGATTTTAAGATAAGAACCATTGAGCTTGATGGCAAACGGATCAAACTCCAAATATGGGATACAGCTGGTCAGGAACGGTTTCGGACAATCACAACTGCTTACTATCGTGGAGCCATGGGTATTTTACTGGTGTACGATGTTACTGATGAATCATCTTTCAACAACATCAGGAACTGGATTCGCAACATTGAGCAGCATGCTTCAGACAATGTCAATAAGATATTGGTAGGAAACAAGGCTGATATGGATGAAAGCAAAAGGGCTGTGCCTACTTCAAAGGGCCAAGCACTTGCCGATGAATATGGGATTAAATTCTTTGAAACTAGTGCAAAAACAAATCTCAATGTGGAACAAGTTTTCTTTTCAATAGCAAGGGATATTAAGCAAAGGCTTGCTGACACGGACTCGAAGGCAGAGCCTACGACAATTAAAATTAATCAACCAGATGCCGGGGCTGGGAGTGGTCAAGTTGCCCAAAAATCGGCTTGCTGTGGTGGTTCTTAAAATGGAGAAAATTTCGAAGGAGGACATTTTAAAATTGCCAAGAGAGGGTAAAAGGAAAAAGGGTGAACTAATTGTGACGACAATGTGATAAGGCGCTTGTAATTTTTTTCTTATATGTCATTTTATTTTTCAAGAAACTTGTTTTAGTGTGTGAAAGATAGGTTCCTATGATTGGAGAAATTATTTGTTGCAAACACTTTGCTTTGCCCAATGCTTTAACTTTTATTTTAGGTTGGAGGGAATATTACTAAATATAATT

Network for GWHGAAZE000781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	13	166	3.90E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07901	RAB8A, MEL	AMPK signaling pathway	map04152
		Endocytosis	map04144
		Autophagy - animal	map04140
		Tight junction	map04530
		Pancreatic secretion	map04972

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	115.703
	SRR3591706	second leaf	48.847
	SRR3591707	mature leaf	39.940
	SRR3591708	Shoot apex	79.692
	SRR3591709	Stem	150.327
	SRR3591710	White floral bud	89.917
	SRR3591711	White flower	69.901
	SRR3591712	Green floral bud	108.376
	SRR3591713	Yellow flower	79.016
SRP173429	SRR8316895	Juvenile bud stage	51.121
	SRR8316896	Juvenile bud stage	82.294
	SRR8316897	Juvenile bud stage	39.128
	SRR8316894	Third green stage	38.800
	SRR8316900	Third green stage	93.378
	SRR8316901	Third green stage	100.776
	SRR8316898	Complete white stage	43.799
	SRR8316899	Complete white stage	126.546
	SRR8316903	Complete white stage	73.072
	SRR8316902	Silver flowering stage	38.013
	SRR8316904	Silver flowering stage	49.432
	SRR8316905	Silver flowering stage	25.208
	SRR8316906	Gold flowering stage	78.316
	SRR8316907	Gold flowering stage	80.678
	SRR8316908	Gold flowering stage	73.287
SRP132670	SRR6706286	Control	72.859
	SRR6706287	Light intensity 50%	73.272
	SRR6706288	Light intensity 20%	79.359
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	85.494
	CNS0095593	Slightly white alabastrum(diploid) 2	98.221
	CNS0095594	Slightly white alabastrum(diploid) 3	93.539
	CNS0095595	Whole white alabastrum(diploid) 2	93.903
	CNS0095596	Whole white alabastrum(diploid) 3	93.133
	CNS0095597	Whole white alabastrum(diploid) 4	91.363
	CNS0095598	Silvery flower (diploied) 1	70.978
	CNS0095599	Silvery flower (diploied) 2	64.373
	CNS0095600	Silvery flower (diploied) 3	60.399
	CNS0095601	Golden flower (diploid) 1	56.354
	CNS0095602	Golden flower (diploid) 2	57.296
	CNS0095603	Golden flower (diploid) 3	55.665
	CNS0095604	Slightly white alabastrum(tetraploid) 1	83.909
	CNS0095605	Slightly white alabastrum(tetraploid) 2	81.654
	CNS0095606	Slightly white alabastrum(tetraploid) 3	91.716
	CNS0095607	Whole white alabastrum(tetraploid) 1	71.176
	CNS0095608	Whole white alabastrum(tetraploid) 2	64.930
	CNS0095609	Whole white alabastrum(tetraploid) 3	79.519
	CNS0095610	Silvery flower (tetraploid) 1	62.842
	CNS0095611	Silvery flower (tetraploid) 2	50.572
	CNS0095612	Silvery flower (tetraploid) 3	57.398
	CNS0095613	Golden flower (tetraploid) 1	64.869
	CNS0095614	Golden flower (tetraploid) 2	66.806
	CNS0095615	Golden flower (tetraploid) 3	50.740
CRA001975	CRR073297	Stem 1	50.743
	CRR073298	Stem 2	56.342
	CRR073299	Stem 3	39.328
	CRR073300	Leaf 1	56.893
	CRR073301	Leaf 2	53.701
	CRR073302	Leaf 3	49.378
	CRR073303	Juvenile bud 1	54.626
	CRR073304	Juvenile bud 2	47.761
	CRR073305	Juvenile bud 3	39.796
	CRR073306	Third green 1	34.446
	CRR073307	Third green 2	33.370
	CRR073308	Third green 3	37.172
	CRR073309	Second white 1	18.092
	CRR073310	Second white 2	33.701
	CRR073311	Second white 3	31.427
	CRR073312	Silver flowering 1	22.229
	CRR073313	Silver flowering 2	18.868
	CRR073314	Silver flowering 3	27.364
	CRR073315	Gold flowering 1	14.157
	CRR073316	Gold flowering 2	24.490
	CRR073317	Gold flowering 3	9.833
	CRR073318	Tawny withering 1	58.275
	CRR073319	Tawny withering 2	67.295
	CRR073320	Tawny withering 3	79.478