Gene detail

Detail information of GWHGAAZE000791

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651059.1	2.1048E-111	PREDICTED: transcription factor MYB59 [Vitis vinifera]
Swissprot	tr\|Q4JL84\|MYB59_ARATH	4E-88	Transcription factor MYB59
trEMBL	tr\|F6GV45\|F6GV45_VITVI	1E-113	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43604.1}
TAIR10	AT5G59780.3	1E-70	myb domain protein 59

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	15962401	15963380	+
GWHAAZE00000001	mRNA	15962401	15963380	+
GWHAAZE00000001	exon	15962401	15962518	+
GWHAAZE00000001	exon	15962645	15962774	+
GWHAAZE00000001	exon	15962891	15963380	+
GWHAAZE00000001	CDS	15962401	15962518	+
GWHAAZE00000001	CDS	15962645	15962774	+
GWHAAZE00000001	CDS	15962891	15963380	+

Transcript Sequence
>GWHTAAZE000793 ATGGAGAAAGAGGAAAATTGCAGAAAGGGGCCATGGACTGAACATGAAGATGTTCAGCTGGTTTTTTATGTGAATTTATTCGGCGATCGCCGATGGGATTTCATAGCAAAAGTATCAGGTTTAAAAAGAACAGGAAAGAGTTGCCGTTTACGCTGGGTTAATTATCTTCATCCCGGCCTTAAACGAGGCAAGATGACGCCCCACGAGGAGCGACTCGTTCTCGAACTTCACTCCAAATGGGGAAATAGGTGGTCAAGAATTGCAAGGAAGTTACCAGGGCGTACTGATAATGAAATCAAGAACTACTGGAGAACCCACATGAGGAAACTGGCCCAGGAGAAGAAGAGGGCTATCGCGTCTCAGTCTTCATCACTTTCAAATTCTTCTTCTTCATCTTCATTAAGTACACCGCATGTGGATTCAATCCCTCTCTTGGAGAGTAAGGAAAGAAGCTTTTATGATACTGGAGGACTTGAGAAAAAGGGTGCTGATCAAGGGGAGGGAGAAAATGGTAATTATTCTATGGATGAGATATGGAACGACATCGTTTCATCGGATGATGACGCAGTCAAGCCAGTTTGTGATGGGTATGGTGAAGAAGTATGCAACTTTTCTTGTCCAATTTTGCCCTCCCCGGTCTGGGATTATTCTCCGGACTCGCTTTGGAGGATGGACGAAGAGGAGAGTAAGATGTTTCTTCCTATAAGTGACATATTTAGCGTGCCATTTATGGGCTGA

Network for GWHGAAZE000791

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	9	56	2.90E-13
PF00249.32	Myb_DNA-binding	62	106	2.50E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.067
	SRR3591706	second leaf	0.959
	SRR3591707	mature leaf	5.509
	SRR3591708	Shoot apex	1.057
	SRR3591709	Stem	5.273
	SRR3591710	White floral bud	1.689
	SRR3591711	White flower	0.897
	SRR3591712	Green floral bud	1.641
	SRR3591713	Yellow flower	0.218
SRP173429	SRR8316895	Juvenile bud stage	0.894
	SRR8316896	Juvenile bud stage	1.372
	SRR8316897	Juvenile bud stage	0.309
	SRR8316894	Third green stage	0.287
	SRR8316900	Third green stage	1.473
	SRR8316901	Third green stage	1.044
	SRR8316898	Complete white stage	0.561
	SRR8316899	Complete white stage	4.457
	SRR8316903	Complete white stage	0.951
	SRR8316902	Silver flowering stage	0.159
	SRR8316904	Silver flowering stage	0.473
	SRR8316905	Silver flowering stage	0.044
	SRR8316906	Gold flowering stage	0.338
	SRR8316907	Gold flowering stage	0.840
	SRR8316908	Gold flowering stage	0.438
SRP132670	SRR6706286	Control	0.871
	SRR6706287	Light intensity 50%	1.295
	SRR6706288	Light intensity 20%	1.811
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.399
	CNS0095593	Slightly white alabastrum(diploid) 2	1.088
	CNS0095594	Slightly white alabastrum(diploid) 3	1.201
	CNS0095595	Whole white alabastrum(diploid) 2	0.768
	CNS0095596	Whole white alabastrum(diploid) 3	1.772
	CNS0095597	Whole white alabastrum(diploid) 4	0.696
	CNS0095598	Silvery flower (diploied) 1	2.141
	CNS0095599	Silvery flower (diploied) 2	1.576
	CNS0095600	Silvery flower (diploied) 3	1.066
	CNS0095601	Golden flower (diploid) 1	0.705
	CNS0095602	Golden flower (diploid) 2	0.405
	CNS0095603	Golden flower (diploid) 3	0.619
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.988
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.214
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.879
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.487
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.573
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.941
	CNS0095610	Silvery flower (tetraploid) 1	0.637
	CNS0095611	Silvery flower (tetraploid) 2	0.996
	CNS0095612	Silvery flower (tetraploid) 3	0.234
	CNS0095613	Golden flower (tetraploid) 1	0.976
	CNS0095614	Golden flower (tetraploid) 2	0.524
	CNS0095615	Golden flower (tetraploid) 3	0.185
CRA001975	CRR073297	Stem 1	1.332
	CRR073298	Stem 2	0.935
	CRR073299	Stem 3	0.239
	CRR073300	Leaf 1	1.183
	CRR073301	Leaf 2	1.459
	CRR073302	Leaf 3	1.179
	CRR073303	Juvenile bud 1	0.794
	CRR073304	Juvenile bud 2	0.476
	CRR073305	Juvenile bud 3	0.763
	CRR073306	Third green 1	0.058
	CRR073307	Third green 2	0.245
	CRR073308	Third green 3	0.281
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.098
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.454
	CRR073316	Gold flowering 2	2.009
	CRR073317	Gold flowering 3	0.974
	CRR073318	Tawny withering 1	2.563
	CRR073319	Tawny withering 2	1.391
	CRR073320	Tawny withering 3	6.337