Gene detail

Detail information of GWHGAAZE000794

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007016537.1	DHBP synthase RibB-like alpha/beta domain,GTP cyclohydrolase II [Theobroma cacao]
Swissprot	tr\|Q9FN89\|RIBA3_ARATH	GTP cyclohydrolase-2 (Precursor)
trEMBL	tr\|A0A061GXJ8\|A0A061GXJ8_THECC	DHBP synthase RibB-like alpha/beta domain,GTP cyclohydrolase II {ECO:0000313\|EMBL:EOY34156.1}
TAIR10	AT5G59750.1	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	16126019	16131132	-
GWHAAZE00000001	mRNA	16126019	16131132	-
GWHAAZE00000001	exon	16130689	16131132	-
GWHAAZE00000001	exon	16129983	16130201	-
GWHAAZE00000001	exon	16129227	16129552	-
GWHAAZE00000001	exon	16128121	16128250	-
GWHAAZE00000001	exon	16127263	16127559	-
GWHAAZE00000001	exon	16126019	16126406	-
GWHAAZE00000001	five_prime_UTR	16131034	16131132	-
GWHAAZE00000001	CDS	16130689	16131033	-
GWHAAZE00000001	CDS	16129983	16130201	-
GWHAAZE00000001	CDS	16129227	16129552	-
GWHAAZE00000001	CDS	16128121	16128250	-
GWHAAZE00000001	CDS	16127263	16127559	-
GWHAAZE00000001	CDS	16126149	16126406	-
GWHAAZE00000001	three_prime_UTR	16126019	16126148	-

Transcript Sequence
>GWHTAAZE000796 CTTTTCTCCTCCAAGTGTACCCTCCACTTGCCCTATTATGCTACTAGACAAACTTCATCACAACTAGATGAACTTCCCCCAATTCTCCGCATTAATTCCATGGATTCCGTTTTGTTCCACTCTCAATTGTTTCAACCCATTATCCTCCTCGGTCCAAGAACTCTAAAGAATCATCAAATTACAGGAATCGGTGTGTATAGAAATAGGCAATTGAGTTCTACTTGTTGGGCAATTGGGGTAACAGGTGACGTGTTCGATGACAGTCCTCTTAGACGAAATGACAATGGGTCTTTGTTGGCTCCCCCTTTTGGGGCTTTATTGGATGCTGAGATTACCCCTGAAACTAATGATTTCTTTGTCAGTGATGCCGAGGGTGATCCTGATTGCCCGACTGAGGGTTTCTCTTCGATCGAACAAGCTCTCGCTATGTTGCGCCAAGGGAAGTTTGTGATTGTTGTAGATGATGAAAATGGAGAAGTTGAAGGAAACATTGTTATGGTAGCGTCTCATGCAAGTCCGCAAGCTATTGGATTCATGGTTAAGCATGGTTCAGGAATCGTGTCTGTTGGAATGAAAGGAGAGGATCTCGAAAGGTTAAAGCTCCCTCTGATGTCACCCGAGAACGAAGACGACTCTTCTGCACCTTCTTTCACCATCACAGTGGATGCAAAAGCCGGCACATCTACTGGGGTATCGGCTTTAGATAGAGCAAAAACTATCCTTGCACTCTCATCTCCTAATTCTAGGCCAGAAGATTTTAGAAGACCGGGCCATGTTTTCCCCCTCAAGTACCGGAACGGTGGAGTTCTAAGGAGAGCTGGTCATACCGAGGCTTCTGTAGATTTGGTTATGTTGGCTGGCTTGGAACCAATTTCTGTTCTCTCAGCTATTGTTGATCCAGATGATGGTTCTATGGCTTCTTTGCCCAATTTGAGGAAGTTAGCATTGGAGCACAACATTCCGTTTGTCTCTATCACTGATTTGATTAGGTATAGAAGAAAAAGGGAAAAACTGGTTGAAAGAACTGCCATTTCACGCTTACCAACAAAATGGGGCTTGTTTGAGGCTTACTGTTATCGTTCAAAGCTAGATGGAACAGAGCACCTAGCCATTGTAAAGGGGAAAATCGGCGATGGAGAAGATGTATTAGTACGGGTTCACTCAGAGTGTTTAACTGGGGATATATTTGGGTCAGCTCGGTGTGATTGTGGCAACCAGTTAGATTTGGCAATGGAAATAATTGAGCAAGCTGGTAGAGGAGTTGTTGTCTATCTCCGAGGTCATGAAGGTCGTGGAATTGGACTAGGTCACAAGTTTCAGGCCTATAATTTGCAGGATGAAGGCCATGATACTGTCGAAGCCAATCTAGAACTTGGCTTTGCTGCCGATGCACGGGAATATGGAATTGGTGCCCAGATACTAAGAGATGTAGGTGTTCGTACAATGCGCCTAATGACTAATAACCCAGCCAAGTTCACTGGTTTGAAGGGCTACGGCTTGGCAGTTGTTGGGCGGGTCCCAGTTTTGACTCCCATTACAGAGGAAAACCAGAGGTACTTGGAAACAAAACGTACAAAGATGGGTCATATATATGGGTCTGATATACAAGGGCCATCGCTCAATCCAAATGTAAATATAATCGAGGCACCAGAGGACATGCAACAGACTGGATGATACTTGTTCATAAAATTCAATTTTTATTTATATTCTTTGTTGCTGCTTGTTTCTATTTGTAAAATAACAATGTTTTCCAAGCATTTGATATACATTACAAAAGTCAATAATACATATTTTTATTGAAATA

Network for GWHGAAZE000794

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00926.20	DHBP_synthase	105	298	7.40E-71
PF00925.21	GTP_cyclohydro2	311	474	1.30E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14652	ribBA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Riboflavin metabolism	map00740
		Folate biosynthesis	map00790

Gene Ontology

GO term	Ontology	Name
GO:0009231	biological_process	riboflavin biosynthetic process
GO:0003935	molecular_function	GTP cyclohydrolase II activity
GO:0008686	molecular_function	3,4-dihydroxy-2-butanone-4-phosphate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.657
	SRR3591706	second leaf	20.032
	SRR3591707	mature leaf	24.433
	SRR3591708	Shoot apex	14.620
	SRR3591709	Stem	11.878
	SRR3591710	White floral bud	18.262
	SRR3591711	White flower	15.729
	SRR3591712	Green floral bud	10.811
	SRR3591713	Yellow flower	16.338
SRP173429	SRR8316895	Juvenile bud stage	9.610
	SRR8316896	Juvenile bud stage	12.726
	SRR8316897	Juvenile bud stage	6.860
	SRR8316894	Third green stage	6.287
	SRR8316900	Third green stage	21.092
	SRR8316901	Third green stage	19.665
	SRR8316898	Complete white stage	16.065
	SRR8316899	Complete white stage	26.585
	SRR8316903	Complete white stage	21.461
	SRR8316902	Silver flowering stage	8.595
	SRR8316904	Silver flowering stage	12.728
	SRR8316905	Silver flowering stage	7.196
	SRR8316906	Gold flowering stage	16.004
	SRR8316907	Gold flowering stage	12.809
	SRR8316908	Gold flowering stage	12.502
SRP132670	SRR6706286	Control	16.265
	SRR6706287	Light intensity 50%	15.797
	SRR6706288	Light intensity 20%	17.869
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.426
	CNS0095593	Slightly white alabastrum(diploid) 2	12.545
	CNS0095594	Slightly white alabastrum(diploid) 3	9.392
	CNS0095595	Whole white alabastrum(diploid) 2	10.097
	CNS0095596	Whole white alabastrum(diploid) 3	12.520
	CNS0095597	Whole white alabastrum(diploid) 4	11.253
	CNS0095598	Silvery flower (diploied) 1	22.836
	CNS0095599	Silvery flower (diploied) 2	23.222
	CNS0095600	Silvery flower (diploied) 3	40.744
	CNS0095601	Golden flower (diploid) 1	22.163
	CNS0095602	Golden flower (diploid) 2	27.521
	CNS0095603	Golden flower (diploid) 3	29.356
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.645
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.227
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.879
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.545
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.290
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.934
	CNS0095610	Silvery flower (tetraploid) 1	46.723
	CNS0095611	Silvery flower (tetraploid) 2	54.763
	CNS0095612	Silvery flower (tetraploid) 3	28.201
	CNS0095613	Golden flower (tetraploid) 1	23.428
	CNS0095614	Golden flower (tetraploid) 2	34.137
	CNS0095615	Golden flower (tetraploid) 3	21.414
CRA001975	CRR073297	Stem 1	21.233
	CRR073298	Stem 2	16.544
	CRR073299	Stem 3	15.930
	CRR073300	Leaf 1	21.292
	CRR073301	Leaf 2	21.358
	CRR073302	Leaf 3	18.513
	CRR073303	Juvenile bud 1	21.771
	CRR073304	Juvenile bud 2	21.205
	CRR073305	Juvenile bud 3	21.764
	CRR073306	Third green 1	10.012
	CRR073307	Third green 2	10.148
	CRR073308	Third green 3	10.721
	CRR073309	Second white 1	10.943
	CRR073310	Second white 2	8.801
	CRR073311	Second white 3	6.366
	CRR073312	Silver flowering 1	4.524
	CRR073313	Silver flowering 2	2.619
	CRR073314	Silver flowering 3	3.476
	CRR073315	Gold flowering 1	45.347
	CRR073316	Gold flowering 2	52.083
	CRR073317	Gold flowering 3	34.729
	CRR073318	Tawny withering 1	10.030
	CRR073319	Tawny withering 2	9.687
	CRR073320	Tawny withering 3	7.995