Gene detail

Detail information of GWHGAAZE000841

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08972.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UKY2\|A0A068UKY2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313\|EMBL:CDP08972.1}
TAIR10	AT5G59980.2	1E-129	Polymerase/histidinol phosphatase-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	17846667	17850214	+
GWHAAZE00000001	mRNA	17846667	17850214	+
GWHAAZE00000001	exon	17846667	17847098	+
GWHAAZE00000001	exon	17847365	17847442	+
GWHAAZE00000001	exon	17847602	17847682	+
GWHAAZE00000001	exon	17848275	17848429	+
GWHAAZE00000001	exon	17848514	17849781	+
GWHAAZE00000001	exon	17850099	17850214	+
GWHAAZE00000001	CDS	17846667	17847098	+
GWHAAZE00000001	CDS	17847365	17847442	+
GWHAAZE00000001	CDS	17847602	17847682	+
GWHAAZE00000001	CDS	17848275	17848429	+
GWHAAZE00000001	CDS	17848514	17849781	+
GWHAAZE00000001	CDS	17850099	17850214	+

Transcript Sequence
>GWHTAAZE000843 ATGGGTTACTTCGATCTAAACATACCCTACTACGAATCAGACAAGCAAATAACCGACAAATCCACCAAAAAAACCAACCGATTAAAGCTCTTAATCAAATCAATGGAGCTAGGTTACAATGGAGTAGCCTATAATCGCACTATGAAGGGGGTAATGTCTGAATCGGAGCGTTGCGATATCTCTCTCTTCCCTCTCTCCTCTATCCTCAAACTTGCCCCTTCTATCTCCTCCGCCGTTGAGCTCCACCGGAATCTCCTCGGTGTACCGCTGTCTACGCCTTTCCGGCAGTACACGCGTCTCACGGTCGTTGTTGATAGCCCCGCGCAGGCCTCGGCTCTGAATTCGGGGAATCCGATCCTCAAGAGTTATGATATTGTGGCGGTTAGGCCGTTGAATCAGAATGCGTTTGAACAGGCTTGTCAGACTTCTGAGGTGGATTTGATAGCTATTGATTTTTCAGAGAAGTTACCATTTCGATTGAAGCAATCTATAGTTAAAGCTGCTATTGAGCGTGGGGTATATTTTGAAATTACGTACTCCAGTCTTATTATGGATGCTCAAGTGAGAAGGCAAATGATAACCAATGCCAAGCTCTTGGTGGATTGGACTCGAGGAAAGAATCTTGTTATCTCAAGTGCTGCTCCTTCAGTTACTGAACTTAGAGGGCCAAATGATCTTGCAAATTTGTCATCTCTACTTGGGCTCTCTATGGAAAGAGCTAAAGCAGCTATTTCCAAAAATTGTAGATCCCTTGTAACTAATGCTTTAAAGAAGAAGTACTTCTACAAGGAGGCCATTAGGGTTGAAGTAATACCATCGGGAAAACAATTTGATTCCATGGGATCTGGGTTTGATGATTGGCTTAAATGGGACCCCATATCTAGTGGTGAGGGTGATTTACAATTAGATGACATAGAAAAGGCTTTCAATGCCTCCAACAAAACATCCAATACTGTGAAAGCCATAGATTTTGCCTCAGTTTTAGATAGCTTGCCACCAAATGGTTTGCAAATTAAGGATTTGATATCCTCAACAAATTCGGGATCAGAGCCACCCGATATTGGTAAAAACTTGTCTACTGTTAAGGAGCCTCAGGTACCAGCTTTGGGATATGGAGTATCGGAATCACCTGAGAGGCTTAAGATTCTTAAAAAAGACACTAAATTTTTTATTTCATCAACTGAGAAAGGTTTGACTAATTCCGAGGAAATTGGGGACTGTACTACCATTGATGAAGAATCCAATATTTTGAATGGGTTTGATGTTGAAACTGTAGCGCAAGATTTGGAATCACAAATTTGCAGGACGAATTGCGAAATGGATCTCATGATACAAGATAATAATGCAACAGTTCCCACTCTGGTACAAGATACTGAAATTGCACAAGTTTCCATGCAGTCCAAGAACATTGATTCTTCTGCTTTCAACCCAGAAGAGTCGAACAGGTTAAAAACTTTAAATCTTTTACGTGAACATAATATTGGGACTGACAAAGATGCAATAGATGATAATGCAGCAGTTCGAGTTATGGTAAAAGATACTGAAATTGGTTCTTTCTGTAATGTTATTGGCGCTACAGAAATTTTCGCACCATGCAGTGATGTCGTTATGGAAAATGAAGAGTCAAAGAGGGATTGTTTGGATGTAGTTTTGGGTGCAGAAAATGATGCAGTGGATGAAGTTTTGCTTGAGACTGAGATGAAGGGTAAAATAGATGCATCTTTGGCCTCACGTGACCTTTCTTTGCATGAAGATTTTCCAAAATTGCCCGTTTTGGATTCAGTTGGGGCAATGAAAAGTAAGACTGATTCTTCCGTCCCGAAAAATGTAACACTGAAGGAGGTGGCAATGGAAAATAAAATGCGAATTGACAGTGATACTGTAACGAAATGTGCAACCTCGCGTGCATTTTTGTCAGGTACATGTACTTTGAAGGAGGTGGCAATGGAAAATAAAATGCAAATTGATGATGATACTGTAATGACATGTGCAACCTCGCGTGCATCTTTGTCAGGAAAAGGTCGAGTAAAACGAAGGACATCTCATGGGCCTTCTCTATTTCCTTTCAAGCGTTTGTTGAGTCCCATACCCATGAAGAAAAAAGCTCGGCGGGTTAAACGAAAACTATAA

Network for GWHGAAZE000841

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01876.17	RNase_P_p30	4	247	4.20E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03539	RPP1, RPP30	RNA transport	map03013
K03539	RPP1, RPP30	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0008033	biological_process	tRNA processing
GO:0003824	molecular_function	catalytic activity
GO:0004540	molecular_function	ribonuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.127
	SRR3591706	second leaf	4.085
	SRR3591707	mature leaf	4.064
	SRR3591708	Shoot apex	6.045
	SRR3591709	Stem	4.035
	SRR3591710	White floral bud	4.017
	SRR3591711	White flower	6.831
	SRR3591712	Green floral bud	7.003
	SRR3591713	Yellow flower	3.182
SRP173429	SRR8316895	Juvenile bud stage	4.128
	SRR8316896	Juvenile bud stage	4.437
	SRR8316897	Juvenile bud stage	3.260
	SRR8316894	Third green stage	2.450
	SRR8316900	Third green stage	7.385
	SRR8316901	Third green stage	6.529
	SRR8316898	Complete white stage	1.646
	SRR8316899	Complete white stage	6.828
	SRR8316903	Complete white stage	3.105
	SRR8316902	Silver flowering stage	1.847
	SRR8316904	Silver flowering stage	2.071
	SRR8316905	Silver flowering stage	0.735
	SRR8316906	Gold flowering stage	3.509
	SRR8316907	Gold flowering stage	2.857
	SRR8316908	Gold flowering stage	4.333
SRP132670	SRR6706286	Control	2.071
	SRR6706287	Light intensity 50%	1.971
	SRR6706288	Light intensity 20%	2.257
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.984
	CNS0095593	Slightly white alabastrum(diploid) 2	4.459
	CNS0095594	Slightly white alabastrum(diploid) 3	5.227
	CNS0095595	Whole white alabastrum(diploid) 2	4.057
	CNS0095596	Whole white alabastrum(diploid) 3	4.275
	CNS0095597	Whole white alabastrum(diploid) 4	4.193
	CNS0095598	Silvery flower (diploied) 1	6.602
	CNS0095599	Silvery flower (diploied) 2	4.165
	CNS0095600	Silvery flower (diploied) 3	3.842
	CNS0095601	Golden flower (diploid) 1	3.114
	CNS0095602	Golden flower (diploid) 2	3.950
	CNS0095603	Golden flower (diploid) 3	3.605
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.688
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.708
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.592
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.771
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.859
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.622
	CNS0095610	Silvery flower (tetraploid) 1	3.995
	CNS0095611	Silvery flower (tetraploid) 2	3.267
	CNS0095612	Silvery flower (tetraploid) 3	2.020
	CNS0095613	Golden flower (tetraploid) 1	2.233
	CNS0095614	Golden flower (tetraploid) 2	3.500
	CNS0095615	Golden flower (tetraploid) 3	1.800
CRA001975	CRR073297	Stem 1	2.889
	CRR073298	Stem 2	2.464
	CRR073299	Stem 3	1.918
	CRR073300	Leaf 1	2.345
	CRR073301	Leaf 2	2.165
	CRR073302	Leaf 3	1.879
	CRR073303	Juvenile bud 1	1.821
	CRR073304	Juvenile bud 2	0.737
	CRR073305	Juvenile bud 3	2.352
	CRR073306	Third green 1	0.325
	CRR073307	Third green 2	0.476
	CRR073308	Third green 3	0.503
	CRR073309	Second white 1	0.375
	CRR073310	Second white 2	0.581
	CRR073311	Second white 3	0.401
	CRR073312	Silver flowering 1	0.297
	CRR073313	Silver flowering 2	0.747
	CRR073314	Silver flowering 3	0.496
	CRR073315	Gold flowering 1	1.551
	CRR073316	Gold flowering 2	2.641
	CRR073317	Gold flowering 3	1.025
	CRR073318	Tawny withering 1	1.474
	CRR073319	Tawny withering 2	2.482
	CRR073320	Tawny withering 3	2.754