Gene detail

Detail information of GWHGAAZE000854

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009620831.1	3.0315E-160	PREDICTED: probable serine/threonine-protein kinase RLCKVII [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LQQ8\|RLCK7_ARATH	4E-139	Probable serine/threonine-protein kinase RLCKVII
trEMBL	tr\|M1CDN2\|M1CDN2_SOLTU	4E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400065260}
TAIR10	AT1G07870.2	2E-106	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	18025949	18031067	-
GWHAAZE00000001	mRNA	18025949	18031067	-
GWHAAZE00000001	exon	18025949	18026287	-
GWHAAZE00000001	exon	18028614	18028840	-
GWHAAZE00000001	exon	18029398	18029587	-
GWHAAZE00000001	exon	18030032	18030282	-
GWHAAZE00000001	exon	18030953	18031067	-
GWHAAZE00000001	CDS	18030953	18031067	-
GWHAAZE00000001	CDS	18030032	18030282	-
GWHAAZE00000001	CDS	18029398	18029587	-
GWHAAZE00000001	CDS	18028614	18028840	-
GWHAAZE00000001	CDS	18025949	18026287	-

Transcript Sequence
>GWHTAAZE000856 ATGGGTTGTTTTCCTTGCTATGGAGATTCAACAAAAAAATCGGAGAAGAATAGAAATGCCATCAACAGAAACATCAATCAAAATAAACGAGACGATCAGATAGAACCCACCTCAGATAAATTAAAAGTTGGTTCACAAATTGACTCGAAGAAGAAAGAGACGAGGGATGTAAATCAGGCTTCGGCTGCCAAAGAGGCGGAATCGAAGAGCAGGGTGTCGAGTGATAGAGAAAGTGAAGTTAGTAAGGCGAAGACGTTCACATTTGCGGAATTGGAGGCCGCAACCGAGAATTTCAACTCGAATTATCTTTTGGGCGAGGGAGGATTCGGCAAAGTTTATAAAGGAAAATTGCAAGACAGCGGTCAGATTGTAGCTATAAAGCAATTAGACCGTGATGGAGTGCAAGGGATTCGGGAATTCATAGTTGAAGTGTTAACATTAAGTATGGTTGATCATGCAAATCTTGTCAAATTAATCGGCTGTTGTGCTGAAGGAGATCAGAGATTATTAGTGTACGAGTACATGCCTTTAGGTTCTTTGGAAGACCATTTACATGATCTTCGTGCTAATAGGAAACAACTTGATTGGAATACTAGAATGAAGATAGCAGCTGGTGCAGCCATGGGCTTAGAGTATTTGCACGATAAGATGAAGCCCCCTGTTATATATCGCGATTTGAAATGTTCGAATATTTTGCTCGGGGAGGATTTTCATCCTAAGCTGTCCGATTTTGGATTGGCCAAAGTGGGCCCTACTGGAGATAAGACCCATGTTTCCACCAGAGCGCGGCCCTTGTTCAAAGACCGGAGGAAATTCTACCAAATGGCGGACCCTGCCCTCGAAGGTCATTACCCGATCCGAGGCTTATACCAAGCGCTTGCCATATCTGCAATGTGCGTGCAAGAGCAACCCAACATGCGTCCCCTCATAGCTGATGTGGTCACGGCTTTGAAATACCTAGCTGCCCAAACATATGACCCCCAAACCCAGCCTCCAGTCCAAGGCCACAGGCGTAGACCATCGTCTCACCAGTCTAAAAGTCAAGAAGACGACAACAAAGTCATTTCTGACGATAATGATGATGAGAGAGAGGAATGTAAGGGTACCTTGAGTGGGGAATGA

Network for GWHGAAZE000854

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	101	254	1.70E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.765
	SRR3591706	second leaf	17.926
	SRR3591707	mature leaf	37.301
	SRR3591708	Shoot apex	24.533
	SRR3591709	Stem	49.190
	SRR3591710	White floral bud	42.303
	SRR3591711	White flower	52.348
	SRR3591712	Green floral bud	28.433
	SRR3591713	Yellow flower	52.950
SRP173429	SRR8316895	Juvenile bud stage	13.671
	SRR8316896	Juvenile bud stage	23.259
	SRR8316897	Juvenile bud stage	9.935
	SRR8316894	Third green stage	10.187
	SRR8316900	Third green stage	30.468
	SRR8316901	Third green stage	34.220
	SRR8316898	Complete white stage	16.792
	SRR8316899	Complete white stage	41.510
	SRR8316903	Complete white stage	31.250
	SRR8316902	Silver flowering stage	24.127
	SRR8316904	Silver flowering stage	31.262
	SRR8316905	Silver flowering stage	13.307
	SRR8316906	Gold flowering stage	39.313
	SRR8316907	Gold flowering stage	36.204
	SRR8316908	Gold flowering stage	39.708
SRP132670	SRR6706286	Control	27.246
	SRR6706287	Light intensity 50%	26.448
	SRR6706288	Light intensity 20%	25.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.630
	CNS0095593	Slightly white alabastrum(diploid) 2	24.149
	CNS0095594	Slightly white alabastrum(diploid) 3	32.656
	CNS0095595	Whole white alabastrum(diploid) 2	32.876
	CNS0095596	Whole white alabastrum(diploid) 3	33.518
	CNS0095597	Whole white alabastrum(diploid) 4	36.279
	CNS0095598	Silvery flower (diploied) 1	36.931
	CNS0095599	Silvery flower (diploied) 2	25.880
	CNS0095600	Silvery flower (diploied) 3	47.208
	CNS0095601	Golden flower (diploid) 1	29.885
	CNS0095602	Golden flower (diploid) 2	41.005
	CNS0095603	Golden flower (diploid) 3	38.520
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.083
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.958
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.547
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.581
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.303
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.128
	CNS0095610	Silvery flower (tetraploid) 1	49.626
	CNS0095611	Silvery flower (tetraploid) 2	44.187
	CNS0095612	Silvery flower (tetraploid) 3	39.350
	CNS0095613	Golden flower (tetraploid) 1	28.795
	CNS0095614	Golden flower (tetraploid) 2	40.091
	CNS0095615	Golden flower (tetraploid) 3	36.476
CRA001975	CRR073297	Stem 1	23.447
	CRR073298	Stem 2	20.556
	CRR073299	Stem 3	15.602
	CRR073300	Leaf 1	29.273
	CRR073301	Leaf 2	27.073
	CRR073302	Leaf 3	19.213
	CRR073303	Juvenile bud 1	24.168
	CRR073304	Juvenile bud 2	18.909
	CRR073305	Juvenile bud 3	20.485
	CRR073306	Third green 1	24.571
	CRR073307	Third green 2	22.391
	CRR073308	Third green 3	23.704
	CRR073309	Second white 1	17.737
	CRR073310	Second white 2	23.591
	CRR073311	Second white 3	19.912
	CRR073312	Silver flowering 1	21.140
	CRR073313	Silver flowering 2	14.824
	CRR073314	Silver flowering 3	20.305
	CRR073315	Gold flowering 1	11.943
	CRR073316	Gold flowering 2	12.802
	CRR073317	Gold flowering 3	7.480
	CRR073318	Tawny withering 1	26.334
	CRR073319	Tawny withering 2	27.116
	CRR073320	Tawny withering 3	20.067