Detail information of GWHGAAZE000857


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010651098.10PREDICTED: uncharacterized protein LOC100267264 isoform X2 [Vitis vinifera]
trEMBLtr|D7SKR3|D7SKR3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI16241.3}
TAIR10AT3G45630.19E-122RNA binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1812072018129315-
GWHAAZE00000001mRNA1812072018129315-
GWHAAZE00000001exon1812072018120757-
GWHAAZE00000001exon1812166918121724-
GWHAAZE00000001exon1812199318122479-
GWHAAZE00000001exon1812292318123033-
GWHAAZE00000001exon1812318018124453-
GWHAAZE00000001exon1812453518124614-
GWHAAZE00000001exon1812584718125979-
GWHAAZE00000001exon1812714518127236-
GWHAAZE00000001exon1812737818127426-
GWHAAZE00000001exon1812750618127589-
GWHAAZE00000001exon1812813218128241-
GWHAAZE00000001exon1812833818128491-
GWHAAZE00000001exon1812862218128786-
GWHAAZE00000001exon1812924518129315-
GWHAAZE00000001CDS1812924518129315-
GWHAAZE00000001CDS1812862218128786-
GWHAAZE00000001CDS1812833818128491-
GWHAAZE00000001CDS1812813218128241-
GWHAAZE00000001CDS1812750618127589-
GWHAAZE00000001CDS1812737818127426-
GWHAAZE00000001CDS1812714518127236-
GWHAAZE00000001CDS1812584718125979-
GWHAAZE00000001CDS1812453518124614-
GWHAAZE00000001CDS1812318018124453-
GWHAAZE00000001CDS1812292318123033-
GWHAAZE00000001CDS1812199318122479-
GWHAAZE00000001CDS1812166918121724-
GWHAAZE00000001CDS1812072018120757-
Transcript Sequence

Network for GWHGAAZE000857

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14570.7zf-RING_436669.90E-09
PF00076.23RRM_11171951.80E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10643CNOT4, NOT4, MOT2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.468
SRR3591706second leaf15.503
SRR3591707mature leaf23.766
SRR3591708Shoot apex15.136
SRR3591709Stem24.897
SRR3591710White floral bud25.591
SRR3591711White flower28.557
SRR3591712Green floral bud20.043
SRR3591713Yellow flower25.457
SRP173429 SRR8316895Juvenile bud stage 10.196
SRR8316896Juvenile bud stage 12.973
SRR8316897Juvenile bud stage 6.095
SRR8316894Third green stage 6.006
SRR8316900Third green stage 16.285
SRR8316901Third green stage 16.161
SRR8316898Complete white stage 9.309
SRR8316899Complete white stage 24.475
SRR8316903Complete white stage 17.417
SRR8316902Silver flowering stage9.243
SRR8316904Silver flowering stage13.199
SRR8316905Silver flowering stage5.731
SRR8316906Gold flowering stage 20.293
SRR8316907Gold flowering stage 17.121
SRR8316908Gold flowering stage 23.614
SRP132670SRR6706286Control20.322
SRR6706287Light intensity 50%21.303
SRR6706288Light intensity 20%21.980
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.931
CNS0095593Slightly white alabastrum(diploid) 28.039
CNS0095594Slightly white alabastrum(diploid) 36.309
CNS0095595Whole white alabastrum(diploid) 27.144
CNS0095596Whole white alabastrum(diploid) 37.671
CNS0095597Whole white alabastrum(diploid) 47.800
CNS0095598Silvery flower (diploied) 110.872
CNS0095599Silvery flower (diploied) 29.076
CNS0095600Silvery flower (diploied) 323.894
CNS0095601Golden flower (diploid) 19.704
CNS0095602Golden flower (diploid) 222.218
CNS0095603Golden flower (diploid) 321.319
CNS0095604Slightly white alabastrum(tetraploid) 110.492
CNS0095605Slightly white alabastrum(tetraploid) 27.534
CNS0095606Slightly white alabastrum(tetraploid) 320.544
CNS0095607Whole white alabastrum(tetraploid) 17.530
CNS0095608Whole white alabastrum(tetraploid) 25.255
CNS0095609Whole white alabastrum(tetraploid) 315.667
CNS0095610Silvery flower (tetraploid) 124.644
CNS0095611Silvery flower (tetraploid) 220.234
CNS0095612Silvery flower (tetraploid) 320.260
CNS0095613Golden flower (tetraploid) 19.272
CNS0095614Golden flower (tetraploid) 219.385
CNS0095615Golden flower (tetraploid) 323.006
CRA001975CRR073297Stem 110.520
CRR073298Stem 211.452
CRR073299Stem 38.019
CRR073300Leaf 112.140
CRR073301Leaf 212.117
CRR073302Leaf 37.615
CRR073303Juvenile bud 19.049
CRR073304Juvenile bud 27.439
CRR073305Juvenile bud 313.154
CRR073306Third green 17.269
CRR073307Third green 25.871
CRR073308Third green 37.105
CRR073309Second white 18.022
CRR073310Second white 28.125
CRR073311Second white 39.754
CRR073312Silver flowering 111.468
CRR073313Silver flowering 29.545
CRR073314Silver flowering 37.799
CRR073315Gold flowering 17.507
CRR073316Gold flowering 212.345
CRR073317Gold flowering 34.476
CRR073318Tawny withering 19.498
CRR073319Tawny withering 27.572
CRR073320Tawny withering 38.588