Gene detail

Detail information of GWHGAAZE000870

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011089867.1	6.4305E-148	PREDICTED: uncharacterized protein LOC105170690 [Sesamum indicum]
Swissprot	tr\|P0CE10\|Y4102_ARATH	6E-12	Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBL	tr\|M1CM44\|M1CM44_SOLTU	1E-146	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400070406}
TAIR10	AT5G60250.1	1E-99	zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	18400671	18403903	+
GWHAAZE00000001	mRNA	18400671	18403903	+
GWHAAZE00000001	exon	18400671	18401151	+
GWHAAZE00000001	exon	18403091	18403903	+
GWHAAZE00000001	five_prime_UTR	18400671	18400701	+
GWHAAZE00000001	CDS	18400702	18401151	+
GWHAAZE00000001	CDS	18403091	18403903	+

Transcript Sequence
>GWHTAAZE000872 AGTCAATACTCACTCACTCTCACCTAAGAAAATGGCGACGACGACGACAGAATCCTCGTCACCCCAACACCGCGGTGATCTCACGGCGGCTGGAACTCTCGACTCCGATTTCGATACCGCCTTACAACTTCAATCCCCAAACGAAGCCGTTCCCATTAAAATTCCGGACGAGTTCAGGGACGAGGGTTCTTCGAAGGATTTGAATGATGATGAGGTTTTTAGGGTTTATTTCAAGGGGATGATGAACGAAGAGAAAATCGGGGATGATTCTTCTTCGACGGTCACATTGGCCGGAATTGGAGTAGGGATTTGTAATGATAAAGACGAGGTGATTTACGAATTGAGGAAGCCGCTGGGGGAGAATGAGCTGAGTATGAGGGGAGTGGAGTGTAAGGCATTGATCGAGGGGCTTAATGTAGCCATTGATTTGGGGTTGAAGAGGATAGTGCTTTATTTTGATTACTATCCCCTATATCAGTTTGTTACAGGCAACTGGTCGTCAAAGCAGCGCAATATTGCACCATTACTCAACCAGGTGGCTCGCCTTACAAACAAATTTACATATTGCGGGGCATCCTTTGTAGCTCGAAATGATATTAAGTATGCGTTTAAACTTGCAAGAGACGCAATAAGTTCTCAAGTAAAAAAACCGGAAGAATCCATCTCTGCCGAGAAAGAGACCTGCGAAATATGCTTTGAAGACTCGAACATTAACCAAATTTTCTCAGTCGATAATTGTACGCACCGATATTGTTTTTCATGTATGAAACAGCACATAGAGGCAAAATTATTCAATGGATCGGTGCCTAAATGCCCACACGAGGACTGCAATTCTGAGTTGAGAATCGATAGCTGCGGTGAATTCTTGCCGCCAAATTTAATCGAGATTATGAAGGTACAAGTGAAGGAAGCTTCGATTCCTGTTGGAGAGAGAATCTATTGCCCTTACCCCAAATGCTCAGCGTTAATGTCAAAAAGAGAGGTCTTAGAGCATCATAAAAGTGAATTTGGTGGGGCCATGAGATGTGTAAAATGTTTTGGCGAGTTCTGTATCAATTGTAAGGTTGTTTGGCATAGTAATATGACGTGTGCGGAGTACGAGGGGAAAAACCTTAATCACCATGCAGAGGATGCAAAGCTGAAGACTCTGGCGGCAAGTAATCTGTGGCGACAATGTGAAAAGTGTAGCCATATGATTGAACTCTCTGCGGGTTGCCACCACATGACTTGCAGGTACTATCTTTTTTCTTCCAACTTGGAGTACAAACGAGCTGAGCTTAGACAAGCTCAATAA

Network for GWHGAAZE000870

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13456.7	RVT_3	85	199	4.20E-22
PF00097.26	zf-C3HC4	218	262	0.0002
PF01485.22	IBR	293	353	1.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0004523	molecular_function	RNA-DNA hybrid ribonuclease activity
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.657
	SRR3591706	second leaf	4.219
	SRR3591707	mature leaf	2.970
	SRR3591708	Shoot apex	12.077
	SRR3591709	Stem	7.180
	SRR3591710	White floral bud	2.105
	SRR3591711	White flower	1.638
	SRR3591712	Green floral bud	4.592
	SRR3591713	Yellow flower	0.139
SRP173429	SRR8316895	Juvenile bud stage	5.772
	SRR8316896	Juvenile bud stage	9.801
	SRR8316897	Juvenile bud stage	3.456
	SRR8316894	Third green stage	3.277
	SRR8316900	Third green stage	8.605
	SRR8316901	Third green stage	7.596
	SRR8316898	Complete white stage	0.452
	SRR8316899	Complete white stage	7.061
	SRR8316903	Complete white stage	0.667
	SRR8316902	Silver flowering stage	0.204
	SRR8316904	Silver flowering stage	0.402
	SRR8316905	Silver flowering stage	0.283
	SRR8316906	Gold flowering stage	0.718
	SRR8316907	Gold flowering stage	0.227
	SRR8316908	Gold flowering stage	0.477
SRP132670	SRR6706286	Control	11.908
	SRR6706287	Light intensity 50%	10.189
	SRR6706288	Light intensity 20%	10.499
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.277
	CNS0095593	Slightly white alabastrum(diploid) 2	7.422
	CNS0095594	Slightly white alabastrum(diploid) 3	5.627
	CNS0095595	Whole white alabastrum(diploid) 2	4.664
	CNS0095596	Whole white alabastrum(diploid) 3	6.032
	CNS0095597	Whole white alabastrum(diploid) 4	4.280
	CNS0095598	Silvery flower (diploied) 1	7.034
	CNS0095599	Silvery flower (diploied) 2	6.183
	CNS0095600	Silvery flower (diploied) 3	2.429
	CNS0095601	Golden flower (diploid) 1	7.419
	CNS0095602	Golden flower (diploid) 2	4.354
	CNS0095603	Golden flower (diploid) 3	4.442
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.755
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.382
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.419
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.484
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.702
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.590
	CNS0095610	Silvery flower (tetraploid) 1	1.516
	CNS0095611	Silvery flower (tetraploid) 2	3.249
	CNS0095612	Silvery flower (tetraploid) 3	0.854
	CNS0095613	Golden flower (tetraploid) 1	0.366
	CNS0095614	Golden flower (tetraploid) 2	2.033
	CNS0095615	Golden flower (tetraploid) 3	0.095
CRA001975	CRR073297	Stem 1	8.392
	CRR073298	Stem 2	7.275
	CRR073299	Stem 3	7.066
	CRR073300	Leaf 1	6.871
	CRR073301	Leaf 2	5.282
	CRR073302	Leaf 3	4.164
	CRR073303	Juvenile bud 1	3.981
	CRR073304	Juvenile bud 2	2.352
	CRR073305	Juvenile bud 3	3.787
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.223
	CRR073308	Third green 3	0.099
	CRR073309	Second white 1	0.031
	CRR073310	Second white 2	0.035
	CRR073311	Second white 3	0.044
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.028
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.940
	CRR073316	Gold flowering 2	3.850
	CRR073317	Gold flowering 3	1.956
	CRR073318	Tawny withering 1	3.284
	CRR073319	Tawny withering 2	3.283
	CRR073320	Tawny withering 3	4.690