Detail information of GWHGAAZE000871


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002526341.10zinc finger protein, putative [Ricinus communis]
Swissprottr|P0CE10|Y4102_ARATH5E-10Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBLtr|B9SK22|B9SK22_RICCO0Zinc finger protein, putative {ECO:0000313|EMBL:EEF36012.1}
TAIR10AT5G60250.14E-98zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1843409318438380+
GWHAAZE00000001mRNA1843409318438380+
GWHAAZE00000001exon1843409318434494+
GWHAAZE00000001exon1843502518435393+
GWHAAZE00000001exon1843757418438380+
GWHAAZE00000001CDS1843409318434494+
GWHAAZE00000001CDS1843502518435393+
GWHAAZE00000001CDS1843757418438380+
Transcript Sequence

Network for GWHGAAZE000871

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0255


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13456.7RVT_31883054.40E-23
PF01485.22IBR3974676.40E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionRNA-DNA hybrid ribonuclease activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.162
SRR3591706second leaf5.289
SRR3591707mature leaf4.685
SRR3591708Shoot apex13.165
SRR3591709Stem35.848
SRR3591710White floral bud12.312
SRR3591711White flower23.591
SRR3591712Green floral bud13.581
SRR3591713Yellow flower7.449
SRP173429 SRR8316895Juvenile bud stage 7.966
SRR8316896Juvenile bud stage 8.621
SRR8316897Juvenile bud stage 4.255
SRR8316894Third green stage 3.644
SRR8316900Third green stage 7.522
SRR8316901Third green stage 8.880
SRR8316898Complete white stage 2.600
SRR8316899Complete white stage 18.489
SRR8316903Complete white stage 4.880
SRR8316902Silver flowering stage2.743
SRR8316904Silver flowering stage4.318
SRR8316905Silver flowering stage1.829
SRR8316906Gold flowering stage 4.195
SRR8316907Gold flowering stage 5.273
SRR8316908Gold flowering stage 7.842
SRP132670SRR6706286Control9.675
SRR6706287Light intensity 50%10.323
SRR6706288Light intensity 20%8.909
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.355
CNS0095593Slightly white alabastrum(diploid) 210.768
CNS0095594Slightly white alabastrum(diploid) 312.652
CNS0095595Whole white alabastrum(diploid) 210.803
CNS0095596Whole white alabastrum(diploid) 35.501
CNS0095597Whole white alabastrum(diploid) 49.475
CNS0095598Silvery flower (diploied) 117.704
CNS0095599Silvery flower (diploied) 212.577
CNS0095600Silvery flower (diploied) 310.055
CNS0095601Golden flower (diploid) 112.381
CNS0095602Golden flower (diploid) 212.438
CNS0095603Golden flower (diploid) 311.658
CNS0095604Slightly white alabastrum(tetraploid) 16.148
CNS0095605Slightly white alabastrum(tetraploid) 25.416
CNS0095606Slightly white alabastrum(tetraploid) 313.216
CNS0095607Whole white alabastrum(tetraploid) 14.712
CNS0095608Whole white alabastrum(tetraploid) 24.077
CNS0095609Whole white alabastrum(tetraploid) 37.257
CNS0095610Silvery flower (tetraploid) 19.101
CNS0095611Silvery flower (tetraploid) 28.485
CNS0095612Silvery flower (tetraploid) 34.720
CNS0095613Golden flower (tetraploid) 13.289
CNS0095614Golden flower (tetraploid) 27.712
CNS0095615Golden flower (tetraploid) 32.005
CRA001975CRR073297Stem 110.225
CRR073298Stem 210.400
CRR073299Stem 311.141
CRR073300Leaf 18.546
CRR073301Leaf 29.187
CRR073302Leaf 38.043
CRR073303Juvenile bud 17.806
CRR073304Juvenile bud 26.564
CRR073305Juvenile bud 39.170
CRR073306Third green 10.470
CRR073307Third green 21.652
CRR073308Third green 31.636
CRR073309Second white 10.904
CRR073310Second white 21.013
CRR073311Second white 31.435
CRR073312Silver flowering 10.857
CRR073313Silver flowering 20.951
CRR073314Silver flowering 30.219
CRR073315Gold flowering 18.044
CRR073316Gold flowering 211.418
CRR073317Gold flowering 38.114
CRR073318Tawny withering 117.585
CRR073319Tawny withering 216.563
CRR073320Tawny withering 317.477