Gene detail

Detail information of GWHGAAZE000878

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009787729.1	PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|Q680Q4\|SIZ1_ARATH	E3 SUMO-protein ligase SIZ1
trEMBL	tr\|A0A067L6K2\|A0A067L6K2_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP44096.1}
TAIR10	AT5G60410.3	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	18669728	18681068	+
GWHAAZE00000001	mRNA	18669728	18681068	+
GWHAAZE00000001	exon	18669728	18669733	+
GWHAAZE00000001	exon	18671104	18671184	+
GWHAAZE00000001	exon	18671743	18671785	+
GWHAAZE00000001	exon	18672737	18672809	+
GWHAAZE00000001	exon	18673064	18673226	+
GWHAAZE00000001	exon	18673348	18673464	+
GWHAAZE00000001	exon	18674170	18674300	+
GWHAAZE00000001	exon	18674708	18674776	+
GWHAAZE00000001	exon	18675937	18676024	+
GWHAAZE00000001	exon	18676108	18676183	+
GWHAAZE00000001	exon	18676479	18676552	+
GWHAAZE00000001	exon	18676789	18676896	+
GWHAAZE00000001	exon	18677936	18678097	+
GWHAAZE00000001	exon	18679448	18679528	+
GWHAAZE00000001	exon	18679776	18681068	+
GWHAAZE00000001	CDS	18669728	18669733	+
GWHAAZE00000001	CDS	18671104	18671184	+
GWHAAZE00000001	CDS	18671743	18671785	+
GWHAAZE00000001	CDS	18672737	18672809	+
GWHAAZE00000001	CDS	18673064	18673226	+
GWHAAZE00000001	CDS	18673348	18673464	+
GWHAAZE00000001	CDS	18674170	18674300	+
GWHAAZE00000001	CDS	18674708	18674776	+
GWHAAZE00000001	CDS	18675937	18676024	+
GWHAAZE00000001	CDS	18676108	18676183	+
GWHAAZE00000001	CDS	18676479	18676552	+
GWHAAZE00000001	CDS	18676789	18676896	+
GWHAAZE00000001	CDS	18677936	18678097	+
GWHAAZE00000001	CDS	18679448	18679528	+
GWHAAZE00000001	CDS	18679776	18681068	+

Transcript Sequence
>GWHTAAZE000880 ATGAAGGACAAATTGGCTTACTTTCGGATAAAGGAGCTCAAGGACATCCTTACTCAACTTGGTCTATCAAAGCAAGGAAAGAAACAGGACCTTGTTGACCGGATATTAGCCATCCTCGCTGATGAACGAGTGTCAGGGATGTGGGCAAAGAAAAATGCTGTTGGGAAGGAAGAAGTAGCGAAACTAGTAGATGACACTTACAGAAAAATGCAGGTTTCTGGGGCAACCGATTTAGCATCATCAAAAGGGCAATCTGCCTCAGATTGCAGTAACACAAAGTTCAAAGAGGAAATTGAAGATTCCTATCCGACTGATAAGACTCGCTGTCCGTGTGGAAGTTCATTGACAACTGATTCAATGATCAAGGCGTATGTGGCTTCCATTTTACTGTTTATGCTCTCAGTTCTGAGCTTTGTATCTTTTTTTCTTGATTTTTCTCTTTACCCAACCTTGAATTCGTTGACAACTGATTCAATGATCAAGTGTGAAGATGCAAGATGCAATGTTTGGCAGCACATTGGTTGTGTTATTATTCCTGATAAACCTATGGAAGGATTTTTACCTCATCCTGAACATTTTTACTGTGAATTATGTAGACTTGGTCGTGCAGATCCCTTCTGGGTGACGGTGGCACATCCTTTGAATCCTGTGAAGTTGAATGTAACAAATGTTCCAGCAGATGGTACAAGCCCAGTGCAGAGTGTGGAGAAAACATTTCAACTTACAAGAGCAGACAAGGACTTGTTGGCAAAACCGGAGTATGATGTTCAGGCCTGGTGCATCCTCCTCAATGACAAGGTTTTGTTTAGGATGCAATGGCCACAATATGCCGACTTACAGGTCAACGGTGTGCCAGTGCGGGCGATAAACAGACCTGGCTCACAATTGCTGGGGGCCAATGGCCGTGATGATGGTCCTATTATCACACCTTGCACCAGAGACGGAATCAATAAAATTTCCTTATCAGGATGTGATGCTCGTGTTTTCTGTTTGGGGGTCAGAATCGTAAAGCGGCGTACTGTCCAACATATACTCAACTTGATTCCAAAGGAGTCTGATGGTGAGCTATTTGAAGATGCTCTTGCTCGTGTTCGACGTTGCGTTGGTGGTGGAACCGCCACAGAGAATGCTGACAGTGACAGTGATCTCGAAGTTGTTTCTGATTCCATTCCAGTCAATTTACGGTGTCCTTGGCAATGCCCCATTTGTCTCAAGAACTACTCGTTGGAGCATATCATCATTGATCCATATTTCAATCGCATCACGACCAAGCTAGAATGCTTGTTTCATCGGTACATGCTTATGGCACTTTGCTTTAATTTTGTGGTGAAGATGCGGAATTGTGGAGAAGAAGTGACGGATATCGAGGTGAAGCCTGATGGGTCTTGGCGTGCGAAGGCAGAAAGTGATCGTAGGGGTCTAGGGGATCTAGGCCTGTGGCACTTCCCTGATAGCACTCTCTGTGTTACTAGGGATGCAGCAGATACCAACACTAAACCAGAAGTGCTCAAGCAGGTCAAACAAGAATGTGTATCTGAAGGTCATATAGGTTTAAAACTTGAAATCAAGAAAAATCGAAACGGGTTTTGGGAATTCAACAAACCAAAAGAGAACACTCCATCCTCTGGCAATAGACCTAGAGAGAATTTTGAAAACCCTAATGTTATTCCTATGAGTAGCAGTGCCACTGGCAGTGGTAGGGACGGCGAAGATCCTAGTGTCAATCAAGATGGTGGTGGCAACTTTGATTTGTCGACTACCAATGGGGCTGAGCTCGATTCCATTTCTCTCAACCTTGACCCAGCATACGTATTTGCTGACCAAAACCCTGCTGAACCGTTAGGGGATGCTGAAGTTATTGTTCTTAGCGATTCAGAAGAAGAGAATGAAACACTAATTCCTGTGGGGCCCATCTATTCAGGTCCCCCACATGGAATTCCAGAATCATATCATGAAGATCCAGCACTAGGTCCTATTGGGAATTCGTGCCTTGGGCCTTTCGATACACATGAAGATGATTTTGAGGTGCCCTTATGGTCTTTGCCTTCTGGTAGCCAGGGTCCCCCTGGTTTTCAGTTATTTGGTTCAGATATGGATGTCTCAGATGCTTTAGTTGATGTGCAGCATGGTTCGATTAACTGTCCCACATCAATAAGTGGTGGCTACACACTGACTACTGCAGAGACTGGTATGGTGGGGTCCACTTCTTTTATCCCCGAGGCATCACTTCACCATTCTAATGCTGATATGAATAATGGGTTAGTTGATAATCCCCTGGCGTTTGGTGGTGATGATCCCTCTCTTCAAATATTTTTGCCTACAAGGCCTTCGGATTCGGCGGTGCAGGCTGATTTGAGACATCAACCGGATATGTCAAATGGTATCCGTACCGAGGATTGGATTTCTCTCAGGCTTGGGGATGGTAGTAGTGGTGGGGGTCACGGTGGGGGTGGGGTTCCAGTTGAGTCTACGGTCACAAATGGAATGAATTTGAGACAGCAATTGTCATCCAAGGAAGGCGCCTTGGATAATTTGGCAGACACTGGTATGTTTCTTCGTATTTGA

Network for GWHGAAZE000878

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02037.28	SAP	8	36	3.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.686
	SRR3591706	second leaf	16.051
	SRR3591707	mature leaf	18.986
	SRR3591708	Shoot apex	20.821
	SRR3591709	Stem	28.746
	SRR3591710	White floral bud	24.678
	SRR3591711	White flower	28.369
	SRR3591712	Green floral bud	18.648
	SRR3591713	Yellow flower	23.042
SRP173429	SRR8316895	Juvenile bud stage	11.849
	SRR8316896	Juvenile bud stage	16.927
	SRR8316897	Juvenile bud stage	11.072
	SRR8316894	Third green stage	6.672
	SRR8316900	Third green stage	14.146
	SRR8316901	Third green stage	14.776
	SRR8316898	Complete white stage	5.813
	SRR8316899	Complete white stage	24.148
	SRR8316903	Complete white stage	12.896
	SRR8316902	Silver flowering stage	7.494
	SRR8316904	Silver flowering stage	11.823
	SRR8316905	Silver flowering stage	4.467
	SRR8316906	Gold flowering stage	18.980
	SRR8316907	Gold flowering stage	15.700
	SRR8316908	Gold flowering stage	19.716
SRP132670	SRR6706286	Control	17.571
	SRR6706287	Light intensity 50%	17.965
	SRR6706288	Light intensity 20%	19.263
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.683
	CNS0095593	Slightly white alabastrum(diploid) 2	10.775
	CNS0095594	Slightly white alabastrum(diploid) 3	8.536
	CNS0095595	Whole white alabastrum(diploid) 2	9.620
	CNS0095596	Whole white alabastrum(diploid) 3	6.231
	CNS0095597	Whole white alabastrum(diploid) 4	7.306
	CNS0095598	Silvery flower (diploied) 1	15.004
	CNS0095599	Silvery flower (diploied) 2	12.062
	CNS0095600	Silvery flower (diploied) 3	21.236
	CNS0095601	Golden flower (diploid) 1	15.286
	CNS0095602	Golden flower (diploid) 2	28.375
	CNS0095603	Golden flower (diploid) 3	28.523
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.207
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.591
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.949
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.220
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.909
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.533
	CNS0095610	Silvery flower (tetraploid) 1	15.266
	CNS0095611	Silvery flower (tetraploid) 2	18.018
	CNS0095612	Silvery flower (tetraploid) 3	15.305
	CNS0095613	Golden flower (tetraploid) 1	10.153
	CNS0095614	Golden flower (tetraploid) 2	17.759
	CNS0095615	Golden flower (tetraploid) 3	19.913
CRA001975	CRR073297	Stem 1	25.183
	CRR073298	Stem 2	22.558
	CRR073299	Stem 3	18.437
	CRR073300	Leaf 1	23.370
	CRR073301	Leaf 2	19.001
	CRR073302	Leaf 3	17.079
	CRR073303	Juvenile bud 1	13.852
	CRR073304	Juvenile bud 2	9.554
	CRR073305	Juvenile bud 3	18.529
	CRR073306	Third green 1	8.588
	CRR073307	Third green 2	6.268
	CRR073308	Third green 3	8.254
	CRR073309	Second white 1	6.959
	CRR073310	Second white 2	9.580
	CRR073311	Second white 3	9.133
	CRR073312	Silver flowering 1	12.050
	CRR073313	Silver flowering 2	10.653
	CRR073314	Silver flowering 3	10.005
	CRR073315	Gold flowering 1	7.741
	CRR073316	Gold flowering 2	15.309
	CRR073317	Gold flowering 3	8.307
	CRR073318	Tawny withering 1	22.168
	CRR073319	Tawny withering 2	25.025
	CRR073320	Tawny withering 3	21.448